View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_high_3 (Length: 503)
Name: NF5884_high_3
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 495
Target Start/End: Complemental strand, 47067542 - 47067054
Alignment:
| Q |
7 |
tgctgtcattcaagatccgaagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggcccaataagcatcccaacg |
106 |
Q |
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| T |
47067542 |
tgctgtcatccaagatctgaagtaaacctgtacttttaaggtaaagatgatgtttgacattggcactaacagtatcagaggcccaataagcatcccaact |
47067443 |
T |
|
| Q |
107 |
tgtttcagctatgtatgctggatacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgataaactagag |
206 |
Q |
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| T |
47067442 |
tgtttcagctatgtatgctggatacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgataaactagag |
47067343 |
T |
|
| Q |
207 |
gacagtttgcctccacaaggtagagattgactctccaatagagtatcagttgggtgatcgaaactctgccatatgatgctggaaatattattgttgtcat |
306 |
Q |
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| T |
47067342 |
gacagtttgcctccacaaggtagagattgactctccaatagagtatcagttgggtgatcgaaactctgccatatgatgctggaaatattattgttgtcat |
47067243 |
T |
|
| Q |
307 |
atagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatctgttagtattat |
406 |
Q |
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| T |
47067242 |
atagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatctgttagtattat |
47067143 |
T |
|
| Q |
407 |
tgtacccttcatggtaaattgtagctttacagttgaggttactggagggtcatcacggtttgcagttcatactattgtgttgttcatct |
495 |
Q |
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| T |
47067142 |
tgtacccttcatggtaaattgtagctttacagttgaggttactggagggtcatcacggtttgcagtccatactattgtgctgttcatct |
47067054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 495
Target Start/End: Original strand, 47076782 - 47077270
Alignment:
| Q |
7 |
tgctgtcattcaagatccgaagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggcccaataagcatcccaacg |
106 |
Q |
| |
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||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
47076782 |
tgctgtcattccagatctgcagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggtccaataagaatcccaacc |
47076881 |
T |
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| Q |
107 |
tgtttcagctatgtatgctggatacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgataaactagag |
206 |
Q |
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| T |
47076882 |
tgtttttgttgtgtatgctgggtacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattggtctctgataaactagag |
47076981 |
T |
|
| Q |
207 |
gacagtttgcctccacaaggtagagattgactctccaatagagtatcagttgggtgatcgaaactctgccatatgatgctggaaatattattgttgtcat |
306 |
Q |
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| T |
47076982 |
gacagttggcctccacaaggcagagattgactctccaataaagtatcagtcgggtgatcgaaactctgccatatgatgctggaaatattatggttgtcat |
47077081 |
T |
|
| Q |
307 |
atagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatctgttagtattat |
406 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47077082 |
atagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgtattagcattaacaataagcttctgttgtccctgttgatctgttagtattat |
47077181 |
T |
|
| Q |
407 |
tgtacccttcatggtaaattgtagctttacagttgaggttactggagggtcatcacggtttgcagttcatactattgtgttgttcatct |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47077182 |
tgtacccttcatggtaaattgtagctttacagttgaggttactggagggtcatcacggtttgcagtccatactattgtgttgttcatct |
47077270 |
T |
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