View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_low_1 (Length: 528)
Name: NF5884_low_1
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 528
Target Start/End: Original strand, 42335735 - 42336250
Alignment:
| Q |
11 |
catcatcaatggtggcgcgtggcacaacattaagtctatcagaattttctcgcaacacaatctagttaaacaaaaatattactctaattgatccatgaca |
110 |
Q |
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| T |
42335735 |
catcatcaatggtggcgcgtggaacaacattaagtctatcagaattttctcgcgacacaatctagttaaacaaaaatattattctaattgatccatgaca |
42335834 |
T |
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| Q |
111 |
taaaatcggtctttctatcattacaattgtcacctatatataaaataa-ttacatgattaatttaattttttgttagaactaaattgaaccatcagaaaa |
209 |
Q |
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| T |
42335835 |
taaaatcggtctttctatcattacaattgtcacctatatataaaaaaaattacacgattaatttaattttt-gttagaactaaattgaaccatcagaaaa |
42335933 |
T |
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| Q |
210 |
ttgcgacgaacaaaaacatatattcaagggaagtnnnnnnnnntgcattgcacaaaaccaacgtgtgtgttaaatgttgtaaggacaaaacaaaaagagg |
309 |
Q |
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| T |
42335934 |
ttgcgacgaacaaaaacatatattcaagggaagtaaaaaaaaatgcattgcacaaaaccaacttgtgtgttaaatgttgtaaggacaaaacaaaaagagg |
42336033 |
T |
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| Q |
310 |
aaccatatacaaaccttctttccaaagattttcttccccttcaaaggtggtggggctagagttttcgaagtagccgatggaggtgagtttccttgagttg |
409 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336034 |
aaccata--caaaccttctttccaaagattttcttccccttcgaaggtggtggggctagagttttcgaagtagccgatggaggtgagtttccttgagttg |
42336131 |
T |
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| Q |
410 |
gactgggtggagatctttgaggagatgatgccggtggattgattgctggagcaggtgcattatggttggaaggagatggagcgggggctggtgtcggaga |
509 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42336132 |
gactgggtggagatctttgaggagatggtgccgatggattggtgactggagcaggtgcattatggttggaagtagatggagcgggggctggtgtcggaga |
42336231 |
T |
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| Q |
510 |
tgaaagtggcgatggtgaa |
528 |
Q |
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| T |
42336232 |
tgaaagtggcgatggtgaa |
42336250 |
T |
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