View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_low_13 (Length: 333)
Name: NF5884_low_13
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 40276942 - 40276599
Alignment:
| Q |
1 |
attataaccgaactagtaaatatttatggacatttaaactaaataggaagacctagttattattattcatcaaaattagagttagactacatatattgaa |
100 |
Q |
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| T |
40276942 |
attataaccgaactagtaaatatttatggacatttaaactaaataggaagacctagttattattattcatcaaaattagagttagactacatatattgaa |
40276843 |
T |
|
| Q |
101 |
tggaatcactttgatgcgtgatagtaa--------------------caatggtggtaacgacagcaatgagaggagggtgtcgacgaaagggtactgta |
180 |
Q |
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| T |
40276842 |
tggaatcactttgatgcgtgatagtaaggttgagggaaaagcagcaacaatggtggtaacgacagcaatgagaggagggtgtcgacgaaagggtactgta |
40276743 |
T |
|
| Q |
181 |
atggtcgtgaagagttggatggtagtatcagagacaggtgaatcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgc |
280 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40276742 |
atggtggtgaagagttggatggtagtatcagagacaggtgaatcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgc |
40276643 |
T |
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| Q |
281 |
gtgaccttagagctcttgatccaaaactctctaacccttcttct |
324 |
Q |
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| T |
40276642 |
gtgaccttagagctcttgatccaaaactctctaacccttcttct |
40276599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 39625453 - 39625351
Alignment:
| Q |
190 |
aagagttggatggtagtatcagagacaggtgaatcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgacctta |
289 |
Q |
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| T |
39625453 |
aagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgacctta |
39625354 |
T |
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| Q |
290 |
gag |
292 |
Q |
| |
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||| |
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| T |
39625353 |
gag |
39625351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 292
Target Start/End: Complemental strand, 39635003 - 39634901
Alignment:
| Q |
190 |
aagagttggatggtagtatcagagacaggtgaatcacgcgttgaagatattgacaaacactccatcatgcaacgaacagggttacctacgcgtgacctta |
289 |
Q |
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||||||||||||||||||| || |||||||||||||| || || ||||| ||||||||||||||||||| ||||||||| |||||| | |||||||||| |
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| T |
39635003 |
aagagttggatggtagtatttgaaacaggtgaatcacgtgtcgaggatatcgacaaacactccatcatgcgacgaacaggtttacctgcacgtgacctta |
39634904 |
T |
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| Q |
290 |
gag |
292 |
Q |
| |
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||| |
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| T |
39634903 |
gag |
39634901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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