View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_low_15 (Length: 297)
Name: NF5884_low_15
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 25782630 - 25782891
Alignment:
| Q |
16 |
aatatacacgatacgttgcaacgaattaagtttaaggaagagtttgctgtccatttagatcctaaaagactcaaggaatcaattgtatgcacgaagatat |
115 |
Q |
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| T |
25782630 |
aatatacacgatacgttgcaacaaattaagtttaaggaagagtttgctgtccatttagatcctaaaagacttaaggaatcacttgcatgcacgaaaatat |
25782729 |
T |
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| Q |
116 |
ccaatttacatnnnnnnnntgatgaaaacgatggaatggaactcgacatattacaatcacatgaatttcttttgaaaaagtgtcattcctttataaattt |
215 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25782730 |
ccaatttacataaaaaaaacgatgaaaatgatggaatggaactcgacatattgcaatcacatgaatttcttttgaaaaagtgtcattcctttataaattt |
25782829 |
T |
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| Q |
216 |
ttaaatcatggaaaaaagtatatattctctnnnnnnnntaatggaaaaagtgtttgttgtaatata |
281 |
Q |
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|||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
25782830 |
ttaaataatggaaaaaag----tattctctaaaaaaaataatggaaaaagtgtttgttgtaatata |
25782891 |
T |
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