View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_low_16 (Length: 295)
Name: NF5884_low_16
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_16 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 83 - 278
Target Start/End: Original strand, 9325928 - 9326123
Alignment:
| Q |
83 |
ctgatactggtacaatacatgtaattgttataatctacgtagtcacaaaaagtagcttttgcgccatggcattgacatttatgcttttgtttaataacaa |
182 |
Q |
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| T |
9325928 |
ctgatactggtacaatacatgtaattgttataatctatgtagtcacaaaaagtagctttcgcgccatggcattgacatttatgcttttgtttaataacaa |
9326027 |
T |
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| Q |
183 |
aatgaactaccagcaatttacgattagaataattcctatactgaaattttgtatcaccaccaaacaatcgttatatttgttagctcaggtgattca |
278 |
Q |
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| T |
9326028 |
aatgaactaccagcaatttacgattagaataattcctatactgaaattttgtatcaccaccaaacaatcgttatatttgttagctcaggtgattca |
9326123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 275
Target Start/End: Original strand, 3144284 - 3144437
Alignment:
| Q |
122 |
tagtcacaaaaagtagcttttgcgccatggcattgacatttatgcttttgtttaataacaaaatgaactaccagcaatttacgattagaataattcctat |
221 |
Q |
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| T |
3144284 |
tagtcataaaaagtaccttttgcaccatggcattgaca-ttatgcttttgtttaataccgactggaattgccagcaagttacgattagaataatccctag |
3144382 |
T |
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| Q |
222 |
actgaaattttgt-atcaccaccaaacaatcgttatatttgttagctcaggtgat |
275 |
Q |
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| T |
3144383 |
actgcaatttcataatcaccatcgaacaatcattatatctgttagctcaggtgat |
3144437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 270
Target Start/End: Complemental strand, 7118190 - 7118004
Alignment:
| Q |
93 |
tacaatacatgtaattgttataatctacgtagtcacaaaaagtagcttttgcgccatggcattgacatttatgc-ttttgt---ttaataacaaaatgaa |
188 |
Q |
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| T |
7118190 |
tacaatacatgtaattgttataagctaaataggcacagaaagtagcgtttgcaccatggcattgaca-ctacgctttttgtttgttaataacaaaaggaa |
7118092 |
T |
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| Q |
189 |
ctaccagcaatt-----tacgattagaataattcctatactgaaattttgt-atcaccaccaaacaatcgttatatttgttagctcag |
270 |
Q |
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| T |
7118091 |
ctaccagcaagttacgatacgattaaaataatccctaaacttaaatttcataatcaccaccaaacaatcattatatttgttagctcag |
7118004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9325846 - 9325898
Alignment:
| Q |
1 |
caggtaattctccattcaaatggttatagctgagatccaacaccttcaattac |
53 |
Q |
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| T |
9325846 |
caggtaattctccattcaaatggttatagctgagatccaacaccttcaattac |
9325898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 9317866 - 9317987
Alignment:
| Q |
110 |
ttataatctacgtagtcacaaaaagtagcttttgcgccatggcattgacatttatgcttttgtttaataa-caaaatgaactaccagcaatttacgatta |
208 |
Q |
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| T |
9317866 |
ttataatctaagtagtcacagaaagtagcttttacaccatggcatcgaca-ttatgattttttttaataagaaaaaggaactattaccaagttacgataa |
9317964 |
T |
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| Q |
209 |
gaataattcctatactgaaattt |
231 |
Q |
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||||||| |||| |||||||||| |
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| T |
9317965 |
gaataatccctaaactgaaattt |
9317987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11421327 - 11421279
Alignment:
| Q |
1 |
caggtaattctccattcaaatggttatagctgagatccaacaccttcaa |
49 |
Q |
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| T |
11421327 |
caggcaattctccattcaattggttatagctgagatccaacaccttcaa |
11421279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 278
Target Start/End: Original strand, 1059 - 1240
Alignment:
| Q |
93 |
tacaatacatgtaattgttataatctacgtagtcacaaaaagtagcttttgcgccatggcattgacatttatgcttttgtttaataacaaaatgaactac |
192 |
Q |
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|||||||||| || ||||||||||||| ||||||||| || |||| ||| ||||||||| |||||| ||| |||||||||||||||| |||||| |
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| T |
1059 |
tacaatacatatagttgttataatctaagtagtcacagaa-gtagggtttagaccatggcatcgacatt-atggttttgtttaataacaa---gaactat |
1153 |
T |
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| Q |
193 |
cagcaatttacgattagaataattcctatactgaaattttgta-tcaccaccaaacaatcgttatatttgttagctcaggtgattca |
278 |
Q |
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| T |
1154 |
caccaaattacgataagaataatccctaaattgaaatttcataatcaccaccaaacaatcgttaaatttgttagctcaggtgattca |
1240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 37460865 - 37460945
Alignment:
| Q |
130 |
aaaagtagcttttgcgccatggcattgacatttatgcttttgtttaataacaaaatgaactaccagcaatttacgattagaa |
211 |
Q |
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| T |
37460865 |
aaaaggagcttttgcaccatggcattgacatt-atggtttagtttaataacaaaaggagctaccagcaagttacgattagaa |
37460945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 37460945 - 37461037
Alignment:
| Q |
187 |
aactaccagcaatttacgattagaataattcctatactgaaattttgta-tcaccaccaaacaatcgttatatttgttagctcaggtgattca |
278 |
Q |
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| T |
37460945 |
aactaccagtaagttacggctagaataatccctaaattgaaattccataatcaccaccaaacaatcattatatcttttagctcaggtgattca |
37461037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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