View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_low_17 (Length: 257)
Name: NF5884_low_17
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 49829268 - 49829027
Alignment:
| Q |
1 |
atcatgtataacacattgcgaaagcaaaagataatcaatacacaaatcatttcatacatatgtaattgttatacagatannnnnnnccttgggcataggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |
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| T |
49829268 |
atcatgtataacacattgcgaaagcaaaagataattaatacacaaatcatttcacacatatgtaattgttatacagatatttttttccttgagcataggt |
49829169 |
T |
|
| Q |
101 |
gaagtaaaattaccttagcagcagattgaaggtccctagcagtcatatccagtgccaaagcataacctgatagatataccaagatgataaattaaaggat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49829168 |
gaagtaaaattaccttagcggcagattgaaggtccctagcagtcatatccagtgccaaagcataacctgatagatataccaagatgataaattaaaggat |
49829069 |
T |
|
| Q |
201 |
aagaaaatcaatcaaacttgaaatttgaaaggaacgagttat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
49829068 |
aagaaaatcaatcaaacttgaaatttgaaaggaacgagttat |
49829027 |
T |
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