View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5884_low_18 (Length: 248)
Name: NF5884_low_18
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27428814 - 27429044
Alignment:
| Q |
1 |
cttaaaatttaaaaaggaggatatgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428814 |
cttaaaatttaaaaaggaggatatgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggt |
27428913 |
T |
|
| Q |
101 |
gtcagtaactttggtgtcaaaaagctctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggtaaaagaatttagcactagttgatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428914 |
gtcagtaactttggtgtcaaaaagctctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggtaaaagaatttagcactagttgatttg |
27429013 |
T |
|
| Q |
201 |
attcattttgacatatagatcaaatacactt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27429014 |
attcattttgacatatagatcaaatacactt |
27429044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 27440362 - 27440552
Alignment:
| Q |
17 |
gaggatatgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtg |
116 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
27440362 |
gaggatacaattccttttgacataaaaggaacatgggaatctatggaagattgttatagattgggcatagcaaagtctattggtgtcagcaactttggta |
27440461 |
T |
|
| Q |
117 |
tcaaaaagctctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggtaaaagaatttagcactagttgatttgattcatt |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| | |||||||| |||| ||||||||||||||| |
|
|
| T |
27440462 |
tcaaaaagctctccatgctcttagaaaatgccgaaattgctcctgcagttaaccaggtatatgaatttagtactacttgatttgattcatt |
27440552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 27443283 - 27443441
Alignment:
| Q |
17 |
gaggatatgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtg |
116 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
27443283 |
gaggatataattccttttgatataaaaggaacatgggaagctatggaatattgttatagattgggcttagcaaagtctattggtgttagcaactttggta |
27443382 |
T |
|
| Q |
117 |
tcaaaaagctctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggta |
175 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
27443383 |
tcaaaaagctctccatgctcttcgaaagtgccaaaatctatcctgcagttaatcaggta |
27443441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 27418310 - 27418373
Alignment:
| Q |
17 |
gaggatatgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgg |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
27418310 |
gaggatatgattccctttgatataaaaggaacatgggaagctacggaagattgttatagattgg |
27418373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 27418393 - 27418483
Alignment:
| Q |
119 |
aaaaagctctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggt---aaaagaatttagcactagttgatttgattcat |
206 |
Q |
| |
|
||||| ||||||||| ||||| || |||| |||| ||||||||||||||||||| | ||||||||| ||| |||||||||| ||||| |
|
|
| T |
27418393 |
aaaaaactctccatagtcttacaagatgcaataatctctcctgcagttaatcaggtagaataagaatttaacaccagttgatttggttcat |
27418483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 26933271 - 26933160
Alignment:
| Q |
17 |
gaggatatgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtg |
116 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||||||| ||| ||||||||| || | |||||| ||| |||| |||||||||||||| || |||||||| |
|
|
| T |
26933271 |
gaggatgtgattccctttgacataaaacgaacatggaaagttatggaagattgatttagattaggcttagccaagtctattggtgttagcaactttggca |
26933172 |
T |
|
| Q |
117 |
tcaaaaagctct |
128 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26933171 |
tcaaaaagctct |
26933160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University