View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5884_low_25 (Length: 208)
Name: NF5884_low_25
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 32901851 - 32901731
Alignment:
| Q |
73 |
tcaatcatcattgcatgaaaacacgtttgcgtgtagcgtacatttgagaaggtactatatattgcatgcttgttgaatgcataaccaaaaacattgttat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32901851 |
tcaatcatcattgcatgaaaacacgtttgcgtgtagcgtacatttgagaaggtactatatattgcatgcttgttgaatgcataaccaaaaaccttgttat |
32901752 |
T |
|
| Q |
173 |
aattaagacatgacttcatct |
193 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32901751 |
aattaagacatgacttcatct |
32901731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 32902617 - 32902552
Alignment:
| Q |
16 |
cataaataacatcctactccacgttagtgagattgttcctttgtatataaaattgaatcaatcatca |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32902617 |
cataaataacatcctactccacgttagtgagattgttccttt-tatataaaattgaatcaatcatca |
32902552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University