View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5884_low_4 (Length: 502)
Name: NF5884_low_4
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 14 - 492
Target Start/End: Original strand, 28330898 - 28331376
Alignment:
| Q |
14 |
aaactgaaaatgtataaaaatgaatttcttatagtttatgaaatttaataatttgaaaagcaaaactaaccagaaacagatgcaccatctcattgcgggt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28330898 |
aaactgaaaatgtataaaaatgaatttcttatagtttatgaaatttaattatttgaaaagcaaaactaaccagaaacagatgcaccatctcattgcgggt |
28330997 |
T |
|
| Q |
114 |
caattccaaagtggtttctccaatatggttgttgttaagaagtgaatctaacacatcattgcgcaccacataatcaactttggaagatcttgaactaatt |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
28330998 |
caattccaaagtggtttctccaacatggttgttgttaagaagtgaatctaacacatcattgcacaccacataatcaactttggaagatcttgaactaatt |
28331097 |
T |
|
| Q |
214 |
cttttttcaataattccatcaaaaatatcacataacttcttcatgtaactggtcatctttgcatgcacaccttgtggatcaaagagacgaagaattggaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28331098 |
cttttttcaataattccatcaaaaatatcacataacttcttcatgtaactggtcatctttgcatgcacaccttgtggatcaaagggacgaagaattggaa |
28331197 |
T |
|
| Q |
314 |
agaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataattttcttaaactcttgagacttttcatcgggtgtggaatgagccaaatc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28331198 |
agaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataattttcttaaactcttgagacttttcatcgggtgtggaatgagccaaatc |
28331297 |
T |
|
| Q |
414 |
aatagagaacaaagtatttgaaattgaattaagaacagtattaaaaacagcctcaccaatatcaaaaacctctcctttg |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28331298 |
aatagagaacaaagtatttgaaattgaattaagaacagtgttaaaaacagcctcaccaatatcaaaaacctctcctttg |
28331376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 69 - 492
Target Start/End: Original strand, 28296409 - 28296835
Alignment:
| Q |
69 |
aaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttg---ttaagaagtgaatctaac |
165 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||| |||||||||||||| ||| |
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|
| T |
28296409 |
aaaagcaacactaaccagaaaaagatgcaccatctcattgcggctcaattcataagtgctttctccaataatattgttgctattaagaagtgaatccaac |
28296508 |
T |
|
| Q |
166 |
acatcattgcgcaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaactgg |
265 |
Q |
| |
|
||||||||| |||| || ||||| | ||||||| |||||||| |||||||| |||||||||||||| |||||||||||| ||||| || || || ||| |
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|
| T |
28296509 |
acatcattgaacacctcaaaatcaccattggaagctcttgaacaaattctttcttcaataattccattaaaaatatcacacaacttttttatacaattgg |
28296608 |
T |
|
| Q |
266 |
tcatctttgcatgcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||| |||||| |
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|
| T |
28296609 |
tcatctttgcatgcacaccttgtggatcaaaaggacgaagaattggaaagaaatctgaaatattaggcctaccagctgcttccatgtaactccaaataat |
28296708 |
T |
|
| Q |
366 |
tttcttaaactcttgagacttttcatcgggtgtggaatgagccaaatcaatagagaacaaagtatttgaaattgaattaagaacagtattaaaaacagcc |
465 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
28296709 |
gttctcaaactcttgagactttttatcaggtttggaatcagccaaatcaatagagaacaaagtgtttgaaattgaattaagaacagtgttaaaaacagcc |
28296808 |
T |
|
| Q |
466 |
tcaccaatatcaaaaacctctcctttg |
492 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
28296809 |
tcaccaatatcaaaaacctcacctttg |
28296835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 68 - 492
Target Start/End: Original strand, 28304301 - 28304720
Alignment:
| Q |
68 |
gaaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttgttaagaagtgaatctaacac |
167 |
Q |
| |
|
||||| ||| |||||||||||||||| | ||| | |||||| |||||| | |||| ||||| ||||||| |||||| || ||||||||||||||| | |
|
|
| T |
28304301 |
gaaaaccaacactaaccagaaacagacataacattttattgcgactcaattgcgaagtagtttcgccaatattgttgttattgagaagtgaatctaaccc |
28304400 |
T |
|
| Q |
168 |
atcattgcgcaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaactggtc |
267 |
Q |
| |
|
|||||||| ||| | |||| ||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28304401 |
atcattgcaaacc---tcatcagctttggaagctcttgaacaaattctttcttcaataattccataaaaaatatcacataacttcttcatgtaactggtc |
28304497 |
T |
|
| Q |
268 |
atctttgcatgcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataattt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||| | |
|
|
| T |
28304498 |
atctttgcatgcacaccttgtggatcaaagggacgaagaattggaaagaaatctgaaacattaggcttaccagctttttccatgataccccaaataatgt |
28304597 |
T |
|
| Q |
368 |
tcttaaactcttgagacttttcatcgggtgtggaatgagccaaatcaatagagaacaaagtatttgaaattgaattaagaacagtattaaaaacagcctc |
467 |
Q |
| |
|
| | |||||||| |||| |||||| |||| |||||||||||||||||||||||||||| |||||||||||||||| | ||| |||||||||| || |
|
|
| T |
28304598 |
tttcaaactctttagac--ttcatcatgtgttaaatgagccaaatcaatagagaacaaagtgtttgaaattgaattaaagaaagttgtaaaaacagcatc |
28304695 |
T |
|
| Q |
468 |
accaatatcaaaaacctctcctttg |
492 |
Q |
| |
|
||||||||||||||| || |||||| |
|
|
| T |
28304696 |
accaatatcaaaaacttcacctttg |
28304720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 69 - 497
Target Start/End: Original strand, 28320477 - 28320902
Alignment:
| Q |
69 |
aaaagcaaaactaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttgttaagaagtgaatctaacaca |
168 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
28320477 |
aaaatcaacactaaccagaaacagatgcaccatctcactgcggctcaattccgaagttgcttctccaatat---taatattaagaagtgaatctaacaca |
28320573 |
T |
|
| Q |
169 |
tcattgcgcaccacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaactggtca |
268 |
Q |
| |
|
||||||| ||| || |||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||||||| | | |||||| |
|
|
| T |
28320574 |
tcattgcaaacctcaa---caactttggaggatcttgaacgaattctttcttcaataattccatcaaaaatctcacacaacttcttcatatgattggtca |
28320670 |
T |
|
| Q |
269 |
tctttgcatgcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataatttt |
368 |
Q |
| |
|
|| |||||| || |||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||| | |
|
|
| T |
28320671 |
tccttgcatacaaaccttgtggatctaagggacgaagaattggaaagaaatctgaaatattaggcttaccagcttcttccatgataccccaaataatggt |
28320770 |
T |
|
| Q |
369 |
cttaaactcttgagacttttcatcggg---tgtggaatgagccaaatcaatagagaacaaagtatttgaaattgaattaagaacagtattaaaaacagcc |
465 |
Q |
| |
|
|||||| ||||||||||| ||||| || ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||| | |||||||||| |
|
|
| T |
28320771 |
cttaaattcttgagacttctcatcaggtactgtggaatgtgccaaatccatagagaacaaagtgtttgaaattgaattaaggacatttgtaaaaacagct |
28320870 |
T |
|
| Q |
466 |
tcaccaatatcaaaaacctctcctttgctact |
497 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |
|
|
| T |
28320871 |
tcaccaatatcaaaaacctcacctttgttact |
28320902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 78 - 491
Target Start/End: Original strand, 28309912 - 28310322
Alignment:
| Q |
78 |
actaaccagaaacagatgcaccatctcattgcgggtcaattccaaagtggtttctccaatatggttgttgttaagaagtgaatctaacacatcattgcgc |
177 |
Q |
| |
|
||||||| |||| | ||||||||| ||||||||| |||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||| | |
|
|
| T |
28309912 |
actaacctgaaataaatgcaccatttcattgcggctcaatttattagtggtttcttcaatat---tgtaattaagaagtgaatctaacacatcattgcac |
28310008 |
T |
|
| Q |
178 |
accacataatcaactttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttcatgtaactggtcatctttgcat |
277 |
Q |
| |
|
||| | ||||| |||||| ||||||||||||||||| |||||| |||||||||||||| ||||| ||||| ||||| | | |||| ||| |||| | |
|
|
| T |
28310009 |
accttagaatcagaattggaatctcttgaactaattctttcttcaattattccatcaaaaatctcacacaactttttcatatgattggtaatccttgcgt |
28310108 |
T |
|
| Q |
278 |
gcacaccttgtggatcaaagagacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgaaactcccaataattttcttaaactc |
377 |
Q |
| |
|
| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||| || |
|
|
| T |
28310109 |
gtattctttgtggatcaaaaggacgaagaattggaaagaaatctgaaacattaggcttaccagcttcttccatgataccccacataacgttcttaaattc |
28310208 |
T |
|
| Q |
378 |
ttgagacttttcatcgggtgtggaatgagccaaatcaatagagaacaaagtatttgaaattgaattaagaacagtattaaaaacagcctcaccaatatca |
477 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||||| ||||||| ||||||||||||||||| | ||| ||||||||||| ||||||||||| |
|
|
| T |
28310209 |
ttgagacttttcatcaggtgttgaatgagccaaatccatagaacacaaagtgtttgaaattgaattaaggatagttgtaaaaacagccgcaccaatatca |
28310308 |
T |
|
| Q |
478 |
aaaacctctccttt |
491 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
28310309 |
aaaatctcaccttt |
28310322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 367 - 480
Target Start/End: Complemental strand, 28288503 - 28288390
Alignment:
| Q |
367 |
ttcttaaactcttgagacttttcatcgggtgtggaatgagccaaatcaatagagaacaaagtatttgaaattgaattaagaacagtattaaaaacagcct |
466 |
Q |
| |
|
|||| |||| ||||||| |||||||| ||||| |||||||||||||| |||||||| ||||| ||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
28288503 |
ttctcaaacacttgagatttttcatcaggtgttgaatgagccaaatccatagagaagaaagtgtttgaaactgaattaaggacagttgtaaaaacagcct |
28288404 |
T |
|
| Q |
467 |
caccaatatcaaaa |
480 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28288403 |
caccaatatcaaaa |
28288390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 28288719 - 28288689
Alignment:
| Q |
145 |
ttgttaagaagtgaatctaacacatcattgc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28288719 |
ttgttaagaagtgaatctaacacatcattgc |
28288689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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