View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_low_5 (Length: 442)
Name: NF5884_low_5
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 26885214 - 26884793
Alignment:
| Q |
16 |
acacctatatttgtctacaattatttttgtcgaattgatacggaagaaccacggtctcaattgtgaggatagaaaaattgtgaaattttattttagctga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26885214 |
acacctatatttgtctacaattatttttgtcgaattgatacggaagaaccacggtctcaattgtgaggatagaaaaattgtgaaattttattttagttga |
26885115 |
T |
|
| Q |
116 |
aacttttgtacaatagttcacactagaatttgtccatatagtataattacatttgtgacataagaagtgttatgttaactttggcagagccaagaaatgt |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||| |
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| T |
26885114 |
aatttttgtacaatagttcacactagaatttgtccatatagtataattacatttgtgatataagaagtgttatgctaactttggctgagccaagaaatgt |
26885015 |
T |
|
| Q |
216 |
gcctga-----ggacaaacaatcattaactagaaacaaaaatcgctataggagaactggttgtccatcatagaagtgagaactgagttcttaatctcaat |
310 |
Q |
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|||| | || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26885014 |
gcctcatatcaggttaaacaatcattagctagaaacaaaaatcgctataggagaactggttgtccatcatagaagtgagaactgagttcttaatctcaat |
26884915 |
T |
|
| Q |
311 |
tgtcactggattcaccagttgaaacccattagagatctcctccaagttgttgagcctttcatagtcaccaaaattaacatgtggtatgtcacccatatct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26884914 |
tgtcactggattcaccagttgaaacccattagagatctcctccaagttgttgagcctttcatagtcaccaaaattaacatgtggtatgtcacccatatct |
26884815 |
T |
|
| Q |
411 |
tcgtcgaaaaaatcgctctctg |
432 |
Q |
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|||||||||||||||||||||| |
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| T |
26884814 |
tcgtcgaaaaaatcgctctctg |
26884793 |
T |
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