View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_low_6 (Length: 430)
Name: NF5884_low_6
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_6 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 27 - 430
Target Start/End: Original strand, 27428339 - 27428742
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaacaggaacaactcctcctcaacaaattatg |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27428339 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaacaggaacaactcctcctcaacaaattatg |
27428438 |
T |
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| Q |
127 |
cttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctag |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27428439 |
cttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtgtcaaaggctttagagctag |
27428538 |
T |
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| Q |
227 |
gcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaa |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27428539 |
gcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaa |
27428638 |
T |
|
| Q |
327 |
gcaagcataattttcttaaccttttttctacttctttctagtttgtgcattttattacttgcctaatattattgttttggnnnnnnnggattgaaatttt |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27428639 |
gcaagcataattttcttaaccttttttctacttctttctagtttgtgcattttattacttgcctaatattattgttttggtttttttggattgaaatttt |
27428738 |
T |
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| Q |
427 |
taga |
430 |
Q |
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|||| |
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| T |
27428739 |
taga |
27428742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 128 - 406
Target Start/End: Original strand, 27439974 - 27440250
Alignment:
| Q |
128 |
ttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctagg |
227 |
Q |
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||||||| ||| | || |||||||| ||||||||||||||| || | ||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
27439974 |
ttgatgccattaaaataggctacaggcattttgatactgcttctatctataatactgaagaacctctaggccaagctgtgtcaaaagctttagagctagg |
27440073 |
T |
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| Q |
228 |
cctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaag |
327 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |
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| T |
27440074 |
cctcgttaaaaatcgcgatgaactgttcgttacttccaagttatggtgtactgatgctcaccatgaccttgttctcccagctctcaaatccactctcaag |
27440173 |
T |
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| Q |
328 |
caagcataattttcttaacc-ttttttctacttctttctagtttgtgcattttattacttgcctaatattattgttttgg |
406 |
Q |
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||||||||||| |||||||| |||||||| ||||||| |||||||| ||||||| ||| |||||||| ||||||||| |
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| T |
27440174 |
caagcataattctcttaacctttttttcttcttcttttaagtttgtgtattttat---ttgtctaatattgttgttttgg |
27440250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 128 - 346
Target Start/End: Original strand, 27442900 - 27443118
Alignment:
| Q |
128 |
ttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctagg |
227 |
Q |
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||||||| ||||| || |||||||| ||||||||||||||| || | ||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
27442900 |
ttgatgccattgaaataggctacaggcattttgatactgcttctgtctataatactgaagaacctctaggccaagctgtgtcaaaagctttagagctagg |
27442999 |
T |
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| Q |
228 |
cctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaag |
327 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||| |
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| T |
27443000 |
cctcgttaaaaatcgcgatgaactgttcgttacttccaagttatggtgtactgatgctcaccatgaccttgttctcccatctctcaaaactaccatcaag |
27443099 |
T |
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| Q |
328 |
caagcataattttcttaac |
346 |
Q |
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|||||||| || ||||||| |
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| T |
27443100 |
caagcatatttctcttaac |
27443118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 27442781 - 27442853
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaaca |
99 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27442781 |
gatggaagcaaagaaagttccagaggtgatactaaattcagggaaaaagatgccaatgataggttttggaaca |
27442853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 27439855 - 27439917
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgatagg |
89 |
Q |
| |
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|||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
27439855 |
gatggaaataaacaaagttccagaggtgatactaaattcagggaaaaatatgccaatgatagg |
27439917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 187 - 334
Target Start/End: Complemental strand, 26933586 - 26933439
Alignment:
| Q |
187 |
gaacctctaggccaagctgtatcaaaggctttagagctaggcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctc |
286 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||| || || | ||||||||| ||| | ||||||||||||||| ||||||| |||||||||| |
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| T |
26933586 |
gaacctctaggccaagctgtgtcaaaagctctagagctcggacttataaaaaatcgcaatggggttttcattacttccaagctatggtgcactgatgctc |
26933487 |
T |
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| Q |
287 |
aacatgaccttgttctcccagctctcaaaaccaccctcaagcaagcat |
334 |
Q |
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| T |
26933486 |
accatgaccttgttctcaaagctctcaaaaccaccctcaagcaagcat |
26933439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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