View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_low_8 (Length: 368)
Name: NF5884_low_8
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 46669878 - 46670214
Alignment:
| Q |
16 |
cacaaccagcaaaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46669878 |
cacaaccagcaaaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaat |
46669977 |
T |
|
| Q |
116 |
tggataaactaaaccggttaaaaacaacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcggcaatg |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46669978 |
tggataaactaaaccggttaaaaacgacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcagcaatg |
46670077 |
T |
|
| Q |
216 |
gcaaaagcccattgaaaaaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagaccnnnnnnntgttttcctatgaaaccgtttgaaggtg |
315 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46670078 |
gcaaaagcccattgaaagaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagaccaaaaaaatgttttcctatgaaaccgtttgaaggtg |
46670177 |
T |
|
| Q |
316 |
ttccaaaagctagggcaaaaccaaaaacatagaaaaa |
352 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
46670178 |
ttccaaaagctagggcaaaaccaaaaacatagaaaaa |
46670214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 39641681 - 39642017
Alignment:
| Q |
16 |
cacaaccagcaaaatcaataacaccagaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaat |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641681 |
cacaaccagcaaaatcaataacaccggaaccaaacaaaagattttcagaccgaaccggactaccccaaccatcagcagaccaaaaccaatgagcaacaat |
39641780 |
T |
|
| Q |
116 |
tggataaactaaaccggttaaaaacaacgaataaatcaaataagaaacgaactgtgttctctcagcaattgatccacttgtgatccctgctgcggcaatg |
215 |
Q |
| |
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|||||||||||||| |||| ||| |||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||| ||||| |
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| T |
39641781 |
cggataaactaaacctgttagaaaagacgaataaatcaaataagaaacaaattgtgttctctcagcaattgaaccactagtgattcctgctgaagcaatt |
39641880 |
T |
|
| Q |
216 |
gcaaaagcccattgaaaaaggaaaaaaccgtaatcaaaagattgtgaagggaaatcagtaagaccnnnnnnntgttttcctatgaaaccgtttgaaggtg |
315 |
Q |
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||||||||||||||| | || ||| | || ||||||||||| || ||||| |||||| ||||||| |||||||| |||||||| || ||||||| |
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| T |
39641881 |
gcaaaagcccattgatatagaaaatatccataatcaaaagactgagaaggaaaatcactaagaccgaaaaaatgttttccaatgaaaccattagaaggtg |
39641980 |
T |
|
| Q |
316 |
ttccaaaagctagggcaaaaccaaaaacatagaaaaa |
352 |
Q |
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| || ||||| | |||||| || |||| ||||||||| |
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| T |
39641981 |
tgccgaaagcaaaggcaaacccgaaaatatagaaaaa |
39642017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 17091230 - 17091279
Alignment:
| Q |
288 |
tgttttcctatgaaaccgtttgaaggtgttccaaaagctagggcaaaacc |
337 |
Q |
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||||||||||||||||| |||||||||||||| || || | ||||||||| |
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| T |
17091230 |
tgttttcctatgaaaccatttgaaggtgttccgaaggcaaaggcaaaacc |
17091279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 35416015 - 35416072
Alignment:
| Q |
79 |
cccaaccatcagcagaccaaaaccaatgagcaacaattggataaactaaaccggttaa |
136 |
Q |
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||||||||||||| ||||||| |||||| | ||| || |||||||| ||||||||||| |
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| T |
35416015 |
cccaaccatcagcggaccaaacccaatgcgaaacgatgggataaacaaaaccggttaa |
35416072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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