View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885-Insertion-10 (Length: 465)
Name: NF5885-Insertion-10
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885-Insertion-10 |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Complemental strand, 10797505 - 10797055
Alignment:
| Q |
8 |
agtaaacacattttctatacaaaa-gtaccgtatgnnnnnnnatgttattgattaaccaaacatatatgtctgcaggaggacaaaccttgtatgtgttgc |
106 |
Q |
| |
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|||||||||||||||||||||||| ||| | |||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10797505 |
agtaaacacattttctatacaaaatgtatcatatgtttttttatgttattgatgaagcaa-catatatgtctgcaggaggacaaaccttgtatgtgttgc |
10797407 |
T |
|
| Q |
107 |
accaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10797406 |
accaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagc |
10797307 |
T |
|
| Q |
207 |
gaaattggttgaaggcgcaaatggaggatctattggaaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaa |
306 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10797306 |
gaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaa |
10797207 |
T |
|
| Q |
307 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtgcttgc |
406 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10797206 |
ggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtgcttgc |
10797107 |
T |
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| Q |
407 |
tagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgt |
458 |
Q |
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| T |
10797106 |
tagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgt |
10797055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Complemental strand, 50079095 - 50078645
Alignment:
| Q |
8 |
agtaaacacattttctatacaaaa-gtaccgtatgnnnnnnnatgttattgattaaccaaacatatatgtctgcaggaggacaaaccttgtatgtgttgc |
106 |
Q |
| |
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|||||||||||||||||||||||| ||| | |||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50079095 |
agtaaacacattttctatacaaaatgtatcatatgtttttttatgttattgatgaagcaa-catatatgtctgcaggaggacaaaccttgtatgtgttgc |
50078997 |
T |
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| Q |
107 |
accaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagc |
206 |
Q |
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| T |
50078996 |
accaaattgatgcaattgatgaagcaaacttgggatataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagc |
50078897 |
T |
|
| Q |
207 |
gaaattggttgaaggcgcaaatggaggatctattggaaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaa |
306 |
Q |
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| T |
50078896 |
gaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaa |
50078797 |
T |
|
| Q |
307 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtgcttgc |
406 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50078796 |
ggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtgcttgc |
50078697 |
T |
|
| Q |
407 |
tagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgt |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50078696 |
tagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgt |
50078645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 143 - 400
Target Start/End: Complemental strand, 50070557 - 50070300
Alignment:
| Q |
143 |
ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggcgcaaatggaggatctattgg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
50070557 |
ataactatagtatagttggaggagtcgggttgccagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctattgg |
50070458 |
T |
|
| Q |
243 |
aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccatt |
342 |
Q |
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| T |
50070457 |
aaagacgaccgttaaataccaaaccaaaggagatgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccatt |
50070358 |
T |
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| Q |
343 |
gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt |
400 |
Q |
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| T |
50070357 |
gagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt |
50070300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 50070637 - 50070604
Alignment:
| Q |
85 |
ggacaaaccttgtatgtgttgcaccaaattgatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
50070637 |
ggacaaaccttgtatgtgttgcaccaaattgatg |
50070604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 443
Target Start/End: Complemental strand, 50070016 - 50069988
Alignment:
| Q |
415 |
tttgtgtcttcttaatcttccaatgtaat |
443 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
50070016 |
tttgtgtcttcttaatcttccaatgtaat |
50069988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 13501504 - 13501575
Alignment:
| Q |
307 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa |
378 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||||||||| |||||| |||||| ||||||||||| |
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| T |
13501504 |
ggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattacaactaa |
13501575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 13515307 - 13515378
Alignment:
| Q |
307 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa |
378 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||| |||||| |||||| ||||||||||| |
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|
| T |
13515307 |
ggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaa |
13515378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 13541874 - 13541914
Alignment:
| Q |
332 |
tcaaggccattgagggttatgttttggccaatcctaattac |
372 |
Q |
| |
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|||||||||||||||||||||||||||| || ||||||||| |
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| T |
13541874 |
tcaaggccattgagggttatgttttggcaaaccctaattac |
13541914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 13485788 - 13485853
Alignment:
| Q |
307 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac |
372 |
Q |
| |
|
|||||||| | |||||||| |||||||||||| |||| ||||| |||||||| |||||| ||||| |
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| T |
13485788 |
ggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattac |
13485853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 13509549 - 13509614
Alignment:
| Q |
307 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac |
372 |
Q |
| |
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|||||||| | |||||||| ||||||||| || |||| |||||||||||||| |||||| ||||| |
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| T |
13509549 |
ggcaaagctaggggtgatggtcttttcaaagctcttgaaggttatgttttggcaaatcctgattac |
13509614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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