View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885-Insertion-11 (Length: 445)
Name: NF5885-Insertion-11
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885-Insertion-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Original strand, 39602839 - 39603276
Alignment:
| Q |
9 |
ttaacacttaacgatgctccatcaagtaaaaatcaccttatagaatataaaatccaatctcagtattcggtgcaaacatttgcacgcatagaaaattgtt |
108 |
Q |
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| T |
39602839 |
ttaacacttaaccatgctccatcaagtaaaaatcaccttatagaatataaaatccaatctcagtattcggtgcaaacatttgcacgcatagaaaattgtt |
39602938 |
T |
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| Q |
109 |
gattattttcaaaatcacttttcagcaacgatccgaatcaggaatcagaatctgcaacaaaattttaaacaattcgattnnnnnnngcatcgattaacaa |
208 |
Q |
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| T |
39602939 |
gattattttcaaaatcacttttcagcaacgatccgaatcaggaatcagaatctgcaacaaaattttaaacaattcgattaaaaaaagcatcgattaacaa |
39603038 |
T |
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| Q |
209 |
caaatcagattaaaaaattagagcgcgaagggtgtgaaatcgacaacaagtgaaagagatgaagaatcgaagaagagattcggttacttacgaagttatg |
308 |
Q |
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| T |
39603039 |
caaatcagattaaaaaattagagcgcgaagggtgtgaaatcgacaacaagtgaaagagatgaagaatcgaagaagagattcggatacttacgaagttatg |
39603138 |
T |
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| Q |
309 |
gagaattgaagattgagatgaa-gcaaggtgtttgaaaaaattccgcaatggattgaattgggaaaacagagggtgatgcaagataacgaaaatgagttc |
407 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39603139 |
gagaattgaagattgagatgaacgcaaggtgtttgaaaaaattccgcaatggattgaattgggaaaacagagggtgatgcaagataacgaaaatgagttc |
39603238 |
T |
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| Q |
408 |
tactttgagtaagacggttttgtgatcgggtcgggtta |
445 |
Q |
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| T |
39603239 |
tactttgagtaagacggttttgtgatcgggtcgggtta |
39603276 |
T |
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