View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885-Insertion-13 (Length: 345)
Name: NF5885-Insertion-13
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885-Insertion-13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 13713660 - 13713323
Alignment:
| Q |
8 |
atataattaccaggtggatcatagttacaactaataatggtgctacggccatcattacactttaccttagcacatccaacccgaaccgaatcgcgccaga |
107 |
Q |
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| T |
13713660 |
atataattaccaggtggatcatagttacaactaataatggtgctacgaccatcattacacttaaccttagcacatccaacccgaaccgaatcgcgccaga |
13713561 |
T |
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| Q |
108 |
caacttgagtataatgtccacactgataaccagcagcacatgaattactgttgtaattatagtatttcttctctccgatccacatggtaacagcagctgt |
207 |
Q |
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| T |
13713560 |
caacttgagtataatgtccacactgataaccaacagcacatgaattactgttgtaattatagtacttcttctctccgatccacatggtaacagcagctgt |
13713461 |
T |
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| Q |
208 |
tcctgtcatgtcaccactgctccatgctaagttttctccatatggacccttggagtgtaccattttgcagtttgcttttaatttgtttacataggtttct |
307 |
Q |
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| T |
13713460 |
tcctgtcatgtcaccactgctccatgctaagttttctccatatggacccttggagtgtaccattttgcagtttgcttttaatttgtttacataggtttct |
13713361 |
T |
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| Q |
308 |
gcataggatgcaacttttgcatcccaagatattgggcc |
345 |
Q |
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| T |
13713360 |
gcataggatgcaacttttgcatcccaagatattgggcc |
13713323 |
T |
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