View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885-Insertion-14 (Length: 226)
Name: NF5885-Insertion-14
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885-Insertion-14 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 43633503 - 43633720
Alignment:
| Q |
9 |
atgctggccagtttgtgctcatgacaaatccacatattgggaatactggcataaattttggtttgtatctatttatttatatactaattataatcacttg |
108 |
Q |
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| T |
43633503 |
atgctggccagtttgtgctcatgacaaatccacatattgggaatactggcataaattttggtttgtatctatttatttatatactaattataatcactta |
43633602 |
T |
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| Q |
109 |
aatccttgtgcttagagtccattttaaaaaccatcttttgattcattgtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaatt |
208 |
Q |
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| T |
43633603 |
aatccttgtgcttagagtccattttaaaaaccatcttttgattcattgtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaatt |
43633702 |
T |
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| Q |
209 |
agaagtttgagtatcagg |
226 |
Q |
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| T |
43633703 |
agaagtttgagtatcagg |
43633720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 42961728 - 42961936
Alignment:
| Q |
9 |
atgctggccagtttgtgctcatgacaaatccacatattgggaatactggcataaattttggtttgtatctatttatttatatactaattataatcacttg |
108 |
Q |
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| T |
42961728 |
atgctggacagtttgttctcatgacaaatccgcatattgggaatactggcataaattttggttggtatc----tatttatattc-aatt---ctcacctg |
42961819 |
T |
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| Q |
109 |
aatccttgtgcttagagtccattttaaaaaccatcttttgattcattgtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaatt |
208 |
Q |
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| T |
42961820 |
aatccttgtgtttcgaggccgttttaaaaacca-cctttgttttgttgtctgtcagatgacgaggaatcaacgcagtgctttctttctggtctagtaatt |
42961918 |
T |
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| Q |
209 |
agaagtttgagtatcagg |
226 |
Q |
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| T |
42961919 |
agaagtttgagtatcagg |
42961936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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