View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885-Insertion-15 (Length: 145)
Name: NF5885-Insertion-15
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885-Insertion-15 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 41650288 - 41650151
Alignment:
| Q |
8 |
aaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcact |
107 |
Q |
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| T |
41650288 |
aaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcact |
41650189 |
T |
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| Q |
108 |
gcaactggatgtttatatgggacacctaattcatccaa |
145 |
Q |
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| T |
41650188 |
gcaactggatgtttatatgggacacctaattcatccaa |
41650151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 43224083 - 43224207
Alignment:
| Q |
21 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
120 |
Q |
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| T |
43224083 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
43224182 |
T |
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| Q |
121 |
tatatgggacacctaattcatccaa |
145 |
Q |
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| T |
43224183 |
tatattgaacacctaattcatccaa |
43224207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 43213347 - 43213469
Alignment:
| Q |
20 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
119 |
Q |
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| T |
43213347 |
tacctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgt |
43213446 |
T |
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| Q |
120 |
ttatatgggacacctaattcatc |
142 |
Q |
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| T |
43213447 |
ttatatgggacacctaattcatc |
43213469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 5e-51
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 41654816 - 41654691
Alignment:
| Q |
20 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
119 |
Q |
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| T |
41654816 |
tacctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
41654717 |
T |
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| Q |
120 |
ttatatgggacacctaattcatccaa |
145 |
Q |
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| T |
41654716 |
ttatatgtaacacccaattcatccaa |
41654691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 43227884 - 43228008
Alignment:
| Q |
21 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
120 |
Q |
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||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43227884 |
acctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43227983 |
T |
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| Q |
121 |
tatatgggacacctaattcatccaa |
145 |
Q |
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| T |
43227984 |
tatattgaacacccaactcatccaa |
43228008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 43206374 - 43206498
Alignment:
| Q |
21 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
120 |
Q |
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| T |
43206374 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43206473 |
T |
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| Q |
121 |
tatatgggacacctaattcatccaa |
145 |
Q |
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| T |
43206474 |
tatattgaacacccaactcatccaa |
43206498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 5073627 - 5073719
Alignment:
| Q |
32 |
aagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttata |
124 |
Q |
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| T |
5073627 |
aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttata |
5073719 |
T |
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