View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5885-Insertion-2 (Length: 869)

Name: NF5885-Insertion-2
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5885-Insertion-2
NF5885-Insertion-2
[»] chr3 (3 HSPs)
chr3 (7-833)||(34760447-34761274)
chr3 (353-448)||(43815350-43815445)
chr3 (463-512)||(25447298-25447347)
[»] chr4 (3 HSPs)
chr4 (30-249)||(43729430-43729649)
chr4 (351-453)||(43729763-43729865)
chr4 (466-515)||(28300350-28300399)
[»] chr8 (5 HSPs)
chr8 (353-444)||(29215280-29215371)
chr8 (381-445)||(29317308-29317372)
chr8 (381-445)||(29340273-29340337)
chr8 (672-705)||(29356723-29356756)
chr8 (380-445)||(29363663-29363728)
[»] chr1 (3 HSPs)
chr1 (463-532)||(9572142-9572211)
chr1 (464-508)||(3495693-3495737)
chr1 (463-512)||(48830130-48830179)
[»] chr7 (3 HSPs)
chr7 (493-576)||(25422347-25422431)
chr7 (463-512)||(20526413-20526462)
chr7 (463-512)||(22283798-22283847)
[»] chr5 (3 HSPs)
chr5 (60-140)||(14497544-14497624)
chr5 (379-409)||(14497849-14497879)
chr5 (463-512)||(26516367-26516416)
[»] chr6 (2 HSPs)
chr6 (463-533)||(1402963-1403033)
chr6 (463-512)||(2735036-2735085)
[»] chr2 (1 HSPs)
chr2 (99-140)||(30919603-30919644)


Alignment Details
Target: chr3 (Bit Score: 732; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 7 - 833
Target Start/End: Original strand, 34760447 - 34761274
Alignment:
Q  7 cactgacctcatgatcactactagttgaatctctccgaacaggttttggtttccttccaaatcttttgatagaacttgctcttagaatatcatcttctgt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760447 cactgacctcatgatcactactagttgaatctctccgaacaggttttggtttccttccaaatcttttgatagaacttgctcttagaatatcatcttctgt 34760546  T
Q  107 tgttcttctgattggaacagttccttctggacattcttcaccagaatcagtccacaactgtaacctctcactaaccttttctccattgttgtagtatcca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760547 tgttcttctgattggaacagttccttctggacattcttcaccagaatcagtccacaactgtaacctctcactaaccttttctccattgttgtagtatcca 34760646  T
Q  207 tttggcctttctggtggatcctgtaaaccttaaccctcttactttctgtctctcaaataaactaaaaatctcaatgcctaatttataaatcttagttcaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760647 tttggcctttctggtggatcctgtaaaccttaaccctcttactttctgtctctcaaataaactaaaaatctcaatgcctaatttataaatcttagttcaa 34760746  T
Q  307 attaatgcaaagtcattttgtatgcttgagtagttattgaaattattaccaatggtttatgccctttaagcttaggatgatcaaaagctggttgttgatg 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34760747 attaatgcaaagtcattttgtatgcttgagtggttattgaaattattaccaatggtttatgccctttaagcttaggatgatcaaaagctggttgatgatg 34760846  T
Q  407 agataaaatacaatctatcaaatcaccatctggactctgcaacaaaat-----nnnnnnnngataaaataaagttaaactacgtttgtataagctataaa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||| |||| |||||||||||||    
T  34760847 agataaaatacaatctatcaaatcaccatctggactctgcaacaaaataaataaataaaaagataaaataaagttaaactatgtttatataagctataaa 34760946  T
Q  502 ctgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgaccttctcaaacagtctcacgaatgtttacgacagtatataaac 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34760947 ctgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgaccttctcaaacagtctcacgaatgtttacgacagtatataaac 34761046  T
Q  602 tcaaataatctaatccaaagaggcaaaatatcagtaacactgccactggttatagaagaaaagaaaaatgcatgcctgaattgtcttcacagcaggctta 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34761047 tcaaataatctaatccaaagaggcaaaatatcagtaacactgccactggttatag-agaaaagaaaaatgcatgcctgaattgtcttcacagcaggctta 34761145  T
Q  702 ttgattttcatgaggtgagttctgattcttcttaacttaagcaactctgaacctgctttataagtctggttagtcttcgagggggtggatagaatctgaa 801  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  34761146 ttgattttcatgaggtgagttctgattcttcttaacttaagcaactctgaacctgctttataagtctggttagtcttcga-ggggtggatagaatctgag 34761244  T
Q  802 acaataaagtggatgagaacaatgctggagta 833  Q
    |||||| ||| |||||| ||||||||||||||    
T  34761245 acaatagagt-gatgag-acaatgctggagta 34761274  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 448
Target Start/End: Original strand, 43815350 - 43815445
Alignment:
Q  353 taccaatggtttatgccctttaagcttaggatgatcaaaagctggttgttgatgagataaaatacaatctatcaaatcaccatctggactctgcaa 448  Q
    |||||||||||| |||||||| |    ||||||||||||||||||||||| ||| | ||||| ||||||||| | |||||| || |||||||||||    
T  43815350 taccaatggtttttgccctttcaataaaggatgatcaaaagctggttgtttatgcgttaaaacacaatctatgatatcaccgtcaggactctgcaa 43815445  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Complemental strand, 25447347 - 25447298
Alignment:
Q  463 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 512  Q
    ||||||||||| ||||| |   ||||||||||||||||||||||||||||    
T  25447347 gataaaataaacttaaattgtttttgtataagctataaactgttttcata 25447298  T

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Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 43729430 - 43729649
Alignment:
Q  30 gttgaatctctccgaacaggttttggtttccttccaaatcttttgatagaacttgctcttagaatatcatcttctgttgttcttctgattggaacagttc 129  Q
    ||||| |||||||| |||  | ||||||| |||||||||||| | || || |||||||| |||| ||| | |||||||||||||||||||||||||||||    
T  43729430 gttgagtctctccgtacacctcttggttttcttccaaatcttcttatggagcttgctctaagaaaatcttgttctgttgttcttctgattggaacagttc 43729529  T
Q  130 cttctggacattcttcaccagaatcagtccacaactgtaacctctcactaaccttttctccattgttgtagtatccatttggcctttctggtggatcctg 229  Q
    |||  ||||||||||||||||||||| |||| | ||| ||  | |   |  | ||||||||||| |||| ||| || |||||||||||||||||||||||    
T  43729530 ctttaggacattcttcaccagaatcaatccaaagctgaaagttatttgttgcattttctccattcttgttgtacccttttggcctttctggtggatcctg 43729629  T
Q  230 taaaccttaaccctcttact 249  Q
    |||||||||| |||||||||    
T  43729630 taaaccttaagcctcttact 43729649  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 351 - 453
Target Start/End: Original strand, 43729763 - 43729865
Alignment:
Q  351 attaccaatggtttatgccctttaagcttaggatgatcaaaagctggttgttgatgagataaaatacaatctatcaaatcaccatctggactctgcaaca 450  Q
    |||||||||||||| || ||||| ||    ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  43729763 attaccaatggtttttgtcctttgagtagtggatggtcaaaagctggttgttgatgagatataatacaatctatcaaatctccatctggactctgcaaca 43729862  T
Q  451 aaa 453  Q
    |||    
T  43729863 aaa 43729865  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 28300399 - 28300350
Alignment:
Q  466 aaaataaagttaaactacgtttgtataagctataaactgttttcataggc 515  Q
    |||||||||||||| |   ||||||||||||||||||| |||||||||||    
T  28300399 aaaataaagttaaattgtttttgtataagctataaactattttcataggc 28300350  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 444
Target Start/End: Original strand, 29215280 - 29215371
Alignment:
Q  353 taccaatggtttatgccctttaagcttaggatgatcaaaagctggttgttgatgagataaaatacaatctatcaaatcaccatctggactct 444  Q
    |||||||||||| || ||| | | | |||||||||||||||| ||||||| |||||||| || ||||||||| | ||||||||| |||||||    
T  29215280 taccaatggtttttgtcctctcaacgtaggatgatcaaaagccggttgtttatgagatacaacacaatctatgatatcaccatcaggactct 29215371  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 29317372 - 29317308
Alignment:
Q  381 ggatgatcaaaagctggttgttgatgagataaaatacaatctatcaaatcaccatctggactctg 445  Q
    ||||||||||||||| |||||| ||| |  |||||||||||||| | ||||||||| ||||||||    
T  29317372 ggatgatcaaaagctagttgtttatgtgtcaaaatacaatctatgatatcaccatcaggactctg 29317308  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 445
Target Start/End: Complemental strand, 29340337 - 29340273
Alignment:
Q  381 ggatgatcaaaagctggttgttgatgagataaaatacaatctatcaaatcaccatctggactctg 445  Q
    ||||||||||||||| |||||| |||||  |||||||| ||||| | ||||||||| ||||||||    
T  29340337 ggatgatcaaaagctagttgtttatgagtcaaaatacagtctattatatcaccatcaggactctg 29340273  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 705
Target Start/End: Complemental strand, 29356756 - 29356723
Alignment:
Q  672 catgcctgaattgtcttcacagcaggcttattga 705  Q
    ||||||||||||||||| ||||||||||||||||    
T  29356756 catgcctgaattgtcttaacagcaggcttattga 29356723  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 29363728 - 29363663
Alignment:
Q  380 aggatgatcaaaagctggttgttgatgagataaaatacaatctatcaaatcaccatctggactctg 445  Q
    ||||||||||||||||   |||| ||||| ||| ||||||||||| | ||||||||| ||||||||    
T  29363728 aggatgatcaaaagctaactgtttatgagttaatatacaatctatgatatcaccatcaggactctg 29363663  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 532
Target Start/End: Complemental strand, 9572211 - 9572142
Alignment:
Q  463 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttat 532  Q
    ||||||||||||||||| | | |||||||||||||||| | ||||||||| || |||| ||||| |||||    
T  9572211 gataaaataaagttaaattgcttttgtataagctataagccgttttcatatgccatcattgagaacttat 9572142  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 464 - 508
Target Start/End: Complemental strand, 3495737 - 3495693
Alignment:
Q  464 ataaaataaagttaaactacgtttgtataagctataaactgtttt 508  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||    
T  3495737 ataaaataaagttaaattacgtttgtataacctataaattgtttt 3495693  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Complemental strand, 48830179 - 48830130
Alignment:
Q  463 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 512  Q
    ||||||||||||| ||||||  ||  ||||||||||||||||||||||||    
T  48830179 gataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 493 - 576
Target Start/End: Original strand, 25422347 - 25422431
Alignment:
Q  493 agctataaactgttttcataggcgatcactgagagcttataaacatgtcataaattgtttccatgacct-tctcaaacagtctca 576  Q
    ||||||||| |||||||| |||| ||||  ||||| |||||||||||||||||  ||||||||| | || || ||||||||||||    
T  25422347 agctataaattgttttcacaggctatcatggagagtttataaacatgtcataaggtgtttccataagctctcccaaacagtctca 25422431  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 20526413 - 20526462
Alignment:
Q  463 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 512  Q
    ||||||||||||||||| || ||||||| | ||||||| |||||||||||    
T  20526413 gataaaataaagttaaattatgtttgtacatgctataagctgttttcata 20526462  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Complemental strand, 22283847 - 22283798
Alignment:
Q  463 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 512  Q
    ||||||||||||||||| |   ||||||| ||||||||||||||||||||    
T  22283847 gataaaataaagttaaattgtttttgtatcagctataaactgttttcata 22283798  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 14497544 - 14497624
Alignment:
Q  60 cttccaaatcttttgatagaacttgctcttagaatatcatcttctgttgttcttctgattggaacagttccttctggacat 140  Q
    ||||||||| | |||||||||||||| ||||  || || | ||||||||||||||| || ||||  |||||||||||||||    
T  14497544 cttccaaatgtgttgatagaacttgcccttaacatgtcttgttctgttgttcttctaatcggaattgttccttctggacat 14497624  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 379 - 409
Target Start/End: Original strand, 14497849 - 14497879
Alignment:
Q  379 taggatgatcaaaagctggttgttgatgaga 409  Q
    |||||||||||||||||||||||||||||||    
T  14497849 taggatgatcaaaagctggttgttgatgaga 14497879  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 26516367 - 26516416
Alignment:
Q  463 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 512  Q
    ||||||||||||| ||||||| ||  |||||| |||||||||||||||||    
T  26516367 gataaaataaagtcaaactactttcatataagttataaactgttttcata 26516416  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 463 - 533
Target Start/End: Original strand, 1402963 - 1403033
Alignment:
Q  463 gataaaataaagttaaactacgtttgtataagctataaactgttttcataggcgatcactgagagcttata 533  Q
    ||||||||||||||||||||  ||  ||||||||||||| |||||||||| || ||||  |||| ||||||    
T  1402963 gataaaataaagttaaactattttcatataagctataaattgttttcataagctatcatggagatcttata 1403033  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 2735036 - 2735085
Alignment:
Q  463 gataaaataaagttaaactacgtttgtataagctataaactgttttcata 512  Q
    ||||||||||||||||| ||  ||||||||| |||||| |||||||||||    
T  2735036 gataaaataaagttaaattatttttgtataatctataagctgttttcata 2735085  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 30919603 - 30919644
Alignment:
Q  99 tcttctgttgttcttctgattggaacagttccttctggacat 140  Q
    |||||| |||||||||| |||||||||| |||||||||||||    
T  30919603 tcttcttttgttcttctaattggaacagatccttctggacat 30919644  T

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