View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885-Insertion-4 (Length: 810)
Name: NF5885-Insertion-4
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 9 - 796
Target Start/End: Complemental strand, 9732600 - 9731819
Alignment:
| Q |
9 |
tacattacatgtccttgtgtctgttttttgttgtgaaaatgattgttttagaatcttgttgatgnnnnnnnnngtttgtaggctgagcaagaaactgatg |
108 |
Q |
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| T |
9732600 |
tacattacatgtccttgtgtctgttttttgttgtgaaaatgattgttttagaatcttgatgtt--ttttttttgtttgtaggctgagcaagaaactgatg |
9732503 |
T |
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| Q |
109 |
aggtttatgcttgtgttgctttgcttccagaatcagatgtgagatatttctcattctttgcataactaattcaatcttgttttttcataagatatctagt |
208 |
Q |
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| T |
9732502 |
aggtttatgcttgtgttgctttgcttccagaatcagatgtgagatatttctcattctttgcatatctaattcaatcttgttttttcataagatatctagt |
9732403 |
T |
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| Q |
209 |
gctaaaggaaaatattccatgttgaaaagtgagnnnnnnnaaaagtttttaactgtttctgaaactagttttggtttctcttgatggttttgtgcagcaa |
308 |
Q |
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| T |
9732402 |
gctaaaggaaaatattccatgttgaaaagtgagtttttt-aaaagtttttaactgtttctgaaactagttttggtttctcttgatggttttgtgcagcaa |
9732304 |
T |
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| Q |
309 |
actgagcctgtagatcctgatccaaatccttctggttctccaaaacagaagtttcactcattttgcaaaatattaactgcatctgatactagcacacatg |
408 |
Q |
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| T |
9732303 |
actgagcctgtagatcctgatccaaatccttctgattctccaaaacagaagtttcactcattttgcaaaatattaactgcatctgatactagcacacatg |
9732204 |
T |
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| Q |
409 |
gtggattttcagttctgaggaaacatgctaccgagtgcttgccgccattggtaattttcttaccgagtttctttggatgatgctatcannnnnnnnnnnn |
508 |
Q |
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| T |
9732203 |
gtggattttcagttctgaggaaacatgctaccgagtgcttgccgccattggtaattttcttaccgagtttctttggatgatgctatca-ttttgattttt |
9732105 |
T |
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| Q |
509 |
cttaatttcaaatgatttttgtttatgtatatcgtaggacgtgacaccagcaactccaactcaggaagctagcagcaaaggatcttcatggatttgagtg |
608 |
Q |
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| T |
9732104 |
cttaatttcaaatgatttttgtttatgtatatcgtaggacatggcaccagcaactccaactcagg-agctagcagcaaaggatcttcatggatttgagtg |
9732006 |
T |
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| Q |
609 |
gaagtttaaacacatatatagaggtaatttgtagtcttattttcattctctaattttagtgtcatattcagattcttgaaagaaatgaattctatgattt |
708 |
Q |
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| T |
9732005 |
gaagtttaaacacatatatagaggtaatttgtagtcttattttcattctctaattttagtgtcatattcaaattcttgaatg-aatgaattctatgattt |
9731907 |
T |
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| Q |
709 |
gcattgaatgagaaatggaagcgacatggttcttatatccctttccactactgtgatcaggtcacccgagga-gcacttgcttacaacc |
796 |
Q |
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| T |
9731906 |
gcattgaatgagaaatggaagtgacatggttcttatatccc-ttccactactgtgatcaggtcaaccgaggaggcacttgcttacaacc |
9731819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 436
Target Start/End: Complemental strand, 7076630 - 7076555
Alignment:
| Q |
361 |
ttcactcattttgcaaaatattaactgcatctgatactagcacacatggtggattttcagttctgaggaaacatgc |
436 |
Q |
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|||||||||| ||||| || ||||| || || |||||||| ||||||||||| || || ||||| ||||||||||| |
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| T |
7076630 |
ttcactcattctgcaagatcttaaccgcttcggatactagtacacatggtggcttctctgttctcaggaaacatgc |
7076555 |
T |
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