View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885-Insertion-8 (Length: 560)
Name: NF5885-Insertion-8
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 9 - 533
Target Start/End: Complemental strand, 40522732 - 40522208
Alignment:
| Q |
9 |
cctaacccataaaaaaccatgaacaacacttccaatatatctgacaacccttcagagaactcaaatgtattggtatattattttattggtttttcatttt |
108 |
Q |
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| T |
40522732 |
cctaacccataaaaaaccatgaacaacacttccaatatatctgacaacccttcagagaactcaaatgaattagtatattattttattggtttttcatttt |
40522633 |
T |
|
| Q |
109 |
ccattaccctcatgatgatgttcatgtctctattttcatgttattggcaaaacaggctgcaatctagtggcatcaattctaacacagatcatactactga |
208 |
Q |
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| T |
40522632 |
ccattaccctcatgatgatgttcatgtctctattttcatgttattggcaaaacaggatgcaatctagtggcatcaattctaacacagatcatactactga |
40522533 |
T |
|
| Q |
209 |
agtgaatattgaagtatgtgaggaagaaagagacgttaatccgaacagttaccccattttgttgtactcccaagtcaagtttcataagcctgatgattca |
308 |
Q |
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| T |
40522532 |
agtgaatattgaagtatgtgaagaagaaagagacgttaatccgaacagttaccccattttgttgtactcccaagtcaagtttcataagcctgatgattca |
40522433 |
T |
|
| Q |
309 |
acatcactcatttgctcaatttgtttgggagattataaagattcagagtggttgcgtttcttacctgattgtggtcacttttttcataaggactgtattg |
408 |
Q |
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| T |
40522432 |
acatcactcatttgctcaatttgtttgggagattataaagatttagagtggttgcgtttcttacctgattgtggtcacttttttcataaggactgtattg |
40522333 |
T |
|
| Q |
409 |
ctgcatggtttaggttaaacctctcttgtcccctctgtcgaaacttgccaatcccaactcctctttctgaagttacactcttggcaactacacataattg |
508 |
Q |
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| T |
40522332 |
ctgcatggtttaggtcaaacctctcttgtcccctctgtcgaaacttgccaatcccaactcctctttctgaagttacactcttggcaactacacataattg |
40522233 |
T |
|
| Q |
509 |
agtataatctctacaaaggttaaga |
533 |
Q |
| |
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||||||| ||||||| | ||||||| |
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| T |
40522232 |
agtataagctctacacaagttaaga |
40522208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 255 - 466
Target Start/End: Complemental strand, 40526395 - 40526184
Alignment:
| Q |
255 |
agttaccccattttgttgtactcccaagtcaagtttcataagcctgatgattcaacatcactcatttgctcaatttgtttgggagattataaagattcag |
354 |
Q |
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||||||||| ||||| ||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40526395 |
agttaccccgttttgctgtactcacaagtcaagtttcatcataaggctgattcaacatcactcatttgctcaatttgtttgggagattataaagattcag |
40526296 |
T |
|
| Q |
355 |
agtggttgcgtttcttacctgattgtggtcacttttttcataaggactgtattgctgcatggtttaggttaaacctctcttgtcccctctgtcgaaactt |
454 |
Q |
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| T |
40526295 |
agtggttgcgtttcttacctgattgtggtcacttttttcataaggactgtattgctacatggttcaggctaaacctctcatgtcctctatgtcgaaactc |
40526196 |
T |
|
| Q |
455 |
gccaatcccaac |
466 |
Q |
| |
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|||| ||||||| |
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| T |
40526195 |
gccactcccaac |
40526184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 40526638 - 40526479
Alignment:
| Q |
21 |
aaaaccatgaacaacacttccaatatatctgacaacccttcagagaactcaaatgtattggtatattattttattggtttttcattttccattaccctca |
120 |
Q |
| |
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|||||||||||||||||||||| || ||||| || ||||||||||||||||||| ||| | |||||||| ||| || || ||||| || ||| ||| |
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| T |
40526638 |
aaaaccatgaacaacacttccattaattctgaaaatccttcagagaactcaaatgcattagcatattattatatcggattgtcattagcctttattctcc |
40526539 |
T |
|
| Q |
121 |
tgatgatgttcatgtctctattttcatgttattggcaaaacaggctgcaatctagtggca |
180 |
Q |
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| T |
40526538 |
tgatgatgttcatgtctctattttcatgttaccggcaaaacagactgctatctagaggca |
40526479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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