View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885-Insertion-9 (Length: 487)
Name: NF5885-Insertion-9
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 9 - 474
Target Start/End: Original strand, 1791856 - 1792321
Alignment:
| Q |
9 |
attttcttgaaacagagaataaaaaagcttttgtatgaagagacactattgggaatacattgatttatgatttttataaaaattgtgcttattaaacaat |
108 |
Q |
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| T |
1791856 |
attttcttgaaacagagaataaaaaagcttttctatgaagggacactattgggaatacattgatttatgatttttataaaaattgtgcttattaaacaat |
1791955 |
T |
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| Q |
109 |
ttgatctcttcagatttaaaagatttgttgtcttttatataaaataaaaatatatcttttgtcattaactacattagcagaagcattgtcactcgtggat |
208 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1791956 |
ttgatctcttcagatttaaaagatatgttgtcttttatataaaataaaaatatatcttttgtcattaactacattagcagaagcattgtcaatcgtggat |
1792055 |
T |
|
| Q |
209 |
cgtggaaaatagcgatttgtttaaattacacccatttcacaatattatgtactaatcgcaaaacaatagcgatttgttcaaattctgctttgacatagtg |
308 |
Q |
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| T |
1792056 |
cgtggaaaatagcgatttgtttaaattacacccatttcaaaatattatgtactaatcgcaaaacaatagcgatttgttcaaattctgctttgacatagtg |
1792155 |
T |
|
| Q |
309 |
ctgtaccgatgctgtagctgctaatgacaacattgatcagcagtctgattacccgtagttatttcaatatttgattcgtaggtttactggcattttaaat |
408 |
Q |
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| T |
1792156 |
ctgtaccgatgctgtagctgctaatgacaacattgatcagcagtctgattacccgtagttatttcaatatttgattcgtaggtttactggcattttaaat |
1792255 |
T |
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| Q |
409 |
gtcgctgtattattgttgctattgatgtatcattagtgttccttatccccttaatattagtatatg |
474 |
Q |
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| T |
1792256 |
gtcgctgtattattgttgctattgatgtatcattagtgttccttatccccttaatattagtatatg |
1792321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 37538448 - 37538416
Alignment:
| Q |
265 |
cgcaaaacaatagcgatttgttcaaattctgct |
297 |
Q |
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| T |
37538448 |
cgcaaaacaatagcgatttgttcaaattctgct |
37538416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Complemental strand, 2732965 - 2732936
Alignment:
| Q |
263 |
atcgcaaaacaatagcgatttgttcaaatt |
292 |
Q |
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| T |
2732965 |
atcgcaaaacaatagcgatttgttcaaatt |
2732936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 297
Target Start/End: Original strand, 33390657 - 33390686
Alignment:
| Q |
268 |
aaaacaatagcgatttgttcaaattctgct |
297 |
Q |
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| T |
33390657 |
aaaacaatagcgatttgttcaaattctgct |
33390686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 297
Target Start/End: Complemental strand, 28804359 - 28804331
Alignment:
| Q |
269 |
aaacaatagcgatttgttcaaattctgct |
297 |
Q |
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| T |
28804359 |
aaacaatagcgatttgttcaaattctgct |
28804331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 33044004 - 33044032
Alignment:
| Q |
269 |
aaacaatagcgatttgttcaaattctgct |
297 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33044004 |
aaacaatagcgatttgttcaaattctgct |
33044032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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