View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_high_14 (Length: 408)
Name: NF5885_high_14
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 54848870 - 54848675
Alignment:
| Q |
18 |
agatgagtcaattcatgatgtcaaaatatagaataataaacatatgagcatatatggaagnnnnnnnnttgaatcaatgatcaacgggtcaaatgataaa |
117 |
Q |
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| T |
54848870 |
agatgagtcaattcatgatgtcaaaatatagaataataaacatatgagcatatatggaagaaaaaaaattgaatcaatgatcaacgggtcaaatgattaa |
54848771 |
T |
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| Q |
118 |
aatctcttataaatttaataggtagtctcaagttcaaatatatagaaatcttacaattattgaatcaagatagcatcacattggtgaagattatagtgtt |
217 |
Q |
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| T |
54848770 |
aatctcttataaatttaataggtagtctcaagttcaa----agagaaatcttacaattattgaatcgagatagcatcacattggcgaagattatattgtt |
54848675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 277 - 390
Target Start/End: Complemental strand, 54848702 - 54848589
Alignment:
| Q |
277 |
gcatcacattggcgaagattatattgttgagaaggataaatttnnnnnnnttgatttcatttttctatattgaaactgtacaatgtatataaaccgcatg |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54848702 |
gcatcacattggcgaagattatattgttgagaaggataaatttaaaaaaattgatttcatttttctatattgaaactgtacaatgtatataaaccgcatg |
54848603 |
T |
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| Q |
377 |
aatgcggaagtgct |
390 |
Q |
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| T |
54848602 |
aatgcggaagtgct |
54848589 |
T |
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