View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_high_16 (Length: 388)
Name: NF5885_high_16
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 43633734 - 43634101
Alignment:
| Q |
2 |
ctttgcaaatattttctgttcattgagatttccttacttttgtccatactttctctttgtctcttcctatgggtatttattcagtacctcgaactggaga |
101 |
Q |
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| T |
43633734 |
ctttgcaaatattttccgttcattgagctttacttacttttgcccatacttactctttgtctcttcctatgggtatttattcagtacctcgaactggaga |
43633833 |
T |
|
| Q |
102 |
tgtgtgaaagatttgggcgattacttaactgaaaggaatgtcatgggaatttgtaagtaatatgtgaagactgaagagttgttatgacaagaactttaca |
201 |
Q |
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| T |
43633834 |
tgtgtgaaagatttgggcgattacttaactgaaaggaatgtcatgggaatttgtaagtaatatgtgaa-------gagttgttatgacaagaactttaca |
43633926 |
T |
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| Q |
202 |
tgtaaactctggatttttcttgactttgatggtactttgtgatgcaacagatgatgttgatacacgagcaatcacacgtagattacgggaagatggcagc |
301 |
Q |
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| T |
43633927 |
tgtaaactctggatttttcttgactttgatggtactttgtgatgcaacagatgatgttgatacacgagcaatcacacgtagattacgggaagatggcagc |
43634026 |
T |
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| Q |
302 |
cttattggtgttttgagcactgacaattccaaaacagacgaggaattacttcagatgtctaaatcatgggatatt |
376 |
Q |
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| T |
43634027 |
cttattggtgttttgagcactgacaattccaaaacagacgaggaattacttcagatgtctaaatcatgggatatt |
43634101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 238 - 376
Target Start/End: Original strand, 42962206 - 42962344
Alignment:
| Q |
238 |
ttgtgatgcaacagatgatgttgatacacgagcaatcacacgtagattacgggaagatggcagccttattggtgttttgagcactgacaattccaaaaca |
337 |
Q |
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| T |
42962206 |
ttgtgatgcaacagatgatgttgatacacgggcaatcacacgcagattacgagaagatggaagccttattggtgttttgagcaccgacaattccaaaaca |
42962305 |
T |
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| Q |
338 |
gacgaggaattacttcagatgtctaaatcatgggatatt |
376 |
Q |
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| T |
42962306 |
gacgaggaattgctccagatgtctaaatcatgggatatt |
42962344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 42962021 - 42962115
Alignment:
| Q |
68 |
ctatgggtatttattcagtacctcgaactggagatgtgtgaaagatttgggcgattacttaactgaaaggaatgtcatgggaatttgtaagtaat |
162 |
Q |
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| T |
42962021 |
ctatggatatttattcagcacctcaaattggagatgcgagaaagatttaggcgattacttaacagaaaggaatgtcatgggaatttgtaagtaat |
42962115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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