View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5885_high_2 (Length: 880)

Name: NF5885_high_2
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5885_high_2
NF5885_high_2
[»] chr1 (9 HSPs)
chr1 (11-602)||(14372330-14372926)
chr1 (684-738)||(20819603-20819657)
chr1 (707-738)||(33855469-33855500)
chr1 (707-738)||(33925422-33925453)
chr1 (684-738)||(7637638-7637692)
chr1 (692-738)||(12526941-12526987)
chr1 (684-738)||(24509317-24509370)
chr1 (709-738)||(6135017-6135046)
chr1 (709-738)||(24308277-24308306)
[»] chr7 (9 HSPs)
chr7 (683-738)||(6459116-6459171)
chr7 (684-738)||(21120608-21120662)
chr7 (684-738)||(22681441-22681495)
chr7 (684-738)||(43656148-43656201)
chr7 (685-738)||(20398889-20398942)
chr7 (684-735)||(14241320-14241371)
chr7 (684-738)||(8752511-8752565)
chr7 (684-734)||(13427953-13428003)
chr7 (684-738)||(41242163-41242217)
[»] chr8 (4 HSPs)
chr8 (684-738)||(17936365-17936419)
chr8 (684-738)||(15353372-15353425)
chr8 (684-738)||(29934718-29934772)
chr8 (684-738)||(1219207-1219261)
[»] chr4 (7 HSPs)
chr4 (684-738)||(17186293-17186347)
chr4 (684-738)||(44546651-44546705)
chr4 (685-738)||(13159699-13159752)
chr4 (685-738)||(46191195-46191248)
chr4 (698-738)||(22769206-22769246)
chr4 (688-738)||(22322413-22322463)
chr4 (684-738)||(28709188-28709242)
[»] chr5 (10 HSPs)
chr5 (684-735)||(18149364-18149415)
chr5 (684-738)||(9194543-9194597)
chr5 (684-738)||(13390352-13390406)
chr5 (684-738)||(24251324-24251378)
chr5 (684-738)||(26397286-26397340)
chr5 (688-738)||(40632648-40632698)
chr5 (688-735)||(7123934-7123981)
chr5 (684-738)||(21825229-21825284)
chr5 (684-738)||(23257188-23257242)
chr5 (684-738)||(37268356-37268410)
[»] chr6 (4 HSPs)
chr6 (684-738)||(5675491-5675545)
chr6 (684-738)||(18489759-18489813)
chr6 (684-738)||(16477626-16477681)
chr6 (684-738)||(4103083-4103137)
[»] chr2 (4 HSPs)
chr2 (684-738)||(12915781-12915835)
chr2 (695-738)||(33006689-33006732)
chr2 (684-738)||(1206459-1206513)
chr2 (684-738)||(45701188-45701242)
[»] chr3 (2 HSPs)
chr3 (685-738)||(16898665-16898718)
chr3 (684-738)||(10773260-10773314)
[»] scaffold1251 (1 HSPs)
scaffold1251 (683-735)||(861-913)
[»] scaffold0116 (1 HSPs)
scaffold0116 (684-738)||(42189-42243)


Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 11 - 602
Target Start/End: Complemental strand, 14372926 - 14372330
Alignment:
Q  11 tagttatattccaaaatcttatcttattcttatt--ttaa---taaaacctagtacgtagatctacaattaagcaattatatcattccatagttgggata 105  Q
    |||||||||||||||||||||||||||||||| |  ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14372926 tagttatattccaaaatcttatcttattcttaatagttaacaataaaacctagtacgtagatctacaattaagcaattatatcattccatagttgggata 14372827  T
Q  106 ttatatctgtaaagatagatatttgtatagatactttagaaagcaataatacaatatggtgaaatgagagtgctatagcaaacactctccaacatatata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14372826 ttatatctgtaaagatagatatttgtatagatactttagaaagcaataatacaatatggtgaaatgagagtgctatagcaaacactctccaacatatata 14372727  T
Q  206 tacattttaaaaacactctattctattgattaaattttataagtcaaacaaaattatatgagacctgaatgaatttcaactaacacaagagagtgcgtta 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  14372726 tacattttaaaaacactctattctattgattaaattttataagtcaaacaaaattatatgagacctgaatgaatttcaactaacacaaaagagtgtgtta 14372627  T
Q  306 tgatatataactcattgctttcgatgtgcatgcgtatcaattggatgtagctatcttaaccaatagaagttacattttgtttgatcgctaaagaatctcg 405  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14372626 tgatatataactcattgctttccatgtgcatgcgtatcaattggatgtagctaccttaaccaatagaagttacattttgtttgttcgctaaagaatctcg 14372527  T
Q  406 agagaccaatatttaaggacaaatgtttaaagttgtcaacacaattccaactttcttttcttgtgtttcctccaccttaatgtattgtgatttcaaccat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14372526 agagaccaatatttaaggacaaatgtttaaagttgtcaacacaattccaactttcttttcttgtgtttcctccaccttaatgtattgtgatttcaaccat 14372427  T
Q  506 gcaacaaacatttttagatgtgctatggtgcaatgatattaacaaaattctcacgatgggacgttaagatcagataatggctcaaagtccttatatt 602  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14372426 gcaacaaacatttttagatgtgctatggttcaatgatattaacaaaattctcacgatgggacgttaagatcagataatggctcaaagtccttatatt 14372330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 20819657 - 20819603
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||| || ||||||||||  ||||||||||||||||| ||||||||||||||    
T  20819657 cttgtgctgggtgaatcacttttcttttgagcaatatattccattttgatttgtt 20819603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 707 - 738
Target Start/End: Complemental strand, 33855500 - 33855469
Alignment:
Q  707 cttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||||||||||||||||||||||||||    
T  33855500 cttttgagcaatatatttcattttgatttgtt 33855469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 707 - 738
Target Start/End: Original strand, 33925422 - 33925453
Alignment:
Q  707 cttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||||||||||||||||||||||||||    
T  33925422 cttttgagcaatatatttcattttgatttgtt 33925453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 7637692 - 7637638
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||| |  ||||||||||||||||  ||||||||||||||    
T  7637692 cttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttgtt 7637638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 692 - 738
Target Start/End: Complemental strand, 12526987 - 12526941
Alignment:
Q  692 ggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||| ||||||||  | ||||||||||||||||||||||||||||||    
T  12526987 ggattaatcacttttcatttgagcaatatatttcattttgatttgtt 12526941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 24509370 - 24509317
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||||   ||||||||||||||||| ||||||||||||||    
T  24509370 cttgtgcggg-tgaatcactcttcttttgagcaatatattccattttgatttgtt 24509317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 738
Target Start/End: Complemental strand, 6135046 - 6135017
Alignment:
Q  709 tttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||||||||||||||||||||||||    
T  6135046 tttgagcaatatatttcattttgatttgtt 6135017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 738
Target Start/End: Complemental strand, 24308306 - 24308277
Alignment:
Q  709 tttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||||||||||||||||||||||||    
T  24308306 tttgagcaatatatttcattttgatttgtt 24308277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 683 - 738
Target Start/End: Original strand, 6459116 - 6459171
Alignment:
Q  683 acttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||| || ||||||||||  ||||||||||||||||||||||||||||||||    
T  6459116 acttgtgcagggtgaatcacttttcttttgagcaatatatttcattttgatttgtt 6459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 21120608 - 21120662
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||||||||||||    ||||||||||||||||| ||||||||||||||    
T  21120608 cttgtgcgggatgaatcacactgcttttgagcaatatattccattttgatttgtt 21120662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 22681495 - 22681441
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||||   ||||||||||||||||| ||||||||||||||    
T  22681495 cttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttgtt 22681441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 43656148 - 43656201
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||| |||||||    
T  43656148 cttgtgcgggatgaatcactt-acttttgagtaatatattccattttaatttgtt 43656201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 738
Target Start/End: Original strand, 20398889 - 20398942
Alignment:
Q  685 ttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||| |||| |||||||||   ||||||||||||||||||||||||||||||||    
T  20398889 ttgtacggggtgaatcactctgcttttgagcaatatatttcattttgatttgtt 20398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 735
Target Start/End: Original strand, 14241320 - 14241371
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgattt 735  Q
    |||||||||| ||||||||||  | ||| |||||||||||||||||||||||    
T  14241320 cttgtgcggggtgaatcacttttcgttttagcaatatatttcattttgattt 14241371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 8752511 - 8752565
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||| |||||  ||||||||| ||||| ||||||||||||||||    
T  8752511 cttgtgcggggtgaaacacttcgcttttgagctatataattcattttgatttgtt 8752565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 734
Target Start/End: Complemental strand, 13428003 - 13427953
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatt 734  Q
    |||||| ||| |||||||| |  ||||||||||||||||||||||||||||    
T  13428003 cttgtgtggggtgaatcacctttcttttgagcaatatatttcattttgatt 13427953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 41242217 - 41242163
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||  | |||||| |||||||| ||||||||||||||    
T  41242217 cttgtgcggggtgaatcacttttcgtttgagtaatatattccattttgatttgtt 41242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 17936365 - 17936419
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||  | ||||||||||||||||||||||||||||||    
T  17936365 cttgtgcggggtgaatcacttttcctttgagcaatatatttcattttgatttgtt 17936419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 15353372 - 15353425
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||||||||||||||   |||||||||| |||||||||||||||||||||    
T  15353372 cttgtgcgggatgaatcactccgcttttgagca-tatatttcattttgatttgtt 15353425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 29934718 - 29934772
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||| |  ||||||||||||||||| ||||||||||||||    
T  29934718 cttgtgcggggtgaatcacctctcttttgagcaatatattccattttgatttgtt 29934772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 1219207 - 1219261
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||| ||   ||||||| |||||||||||||||||||||||    
T  1219207 cttgtgcggggtgaatcaattctattttgagtaatatatttcattttgatttgtt 1219261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 17186293 - 17186347
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||||||||||||||   ||||||||||||||||| ||||||||||||||    
T  17186293 cttgtgcgggatgaatcactcttcttttgagcaatatattccattttgatttgtt 17186347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 44546651 - 44546705
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||  | ||||||||||||||| ||||||||||||||    
T  44546651 cttgtgcggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 44546705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 738
Target Start/End: Complemental strand, 13159752 - 13159699
Alignment:
Q  685 ttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||| ||||||||||  | ||||||||||||||| ||||||||||||||    
T  13159752 ttgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 13159699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 738
Target Start/End: Complemental strand, 46191248 - 46191195
Alignment:
Q  685 ttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||| ||||||||||  | ||||||||||||||| ||||||||||||||    
T  46191248 ttgtgcggggtgaatcacttttcgtttgagcaatatattccattttgatttgtt 46191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 738
Target Start/End: Complemental strand, 22769246 - 22769206
Alignment:
Q  698 atcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  22769246 atcacttagcttttgaacaatatatttcattttgatttgtt 22769206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 688 - 738
Target Start/End: Complemental strand, 22322463 - 22322413
Alignment:
Q  688 tgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||||||||||  ||||||| |||| |||| ||||||||||||||    
T  22322463 tgcgggatgaatcactttgcttttgaacaatttattccattttgatttgtt 22322413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 28709188 - 28709242
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||| |   |||||||| |||||||||||||||||||||||    
T  28709188 cttgtgcggggtgaatcattcctcttttgagtaatatatttcattttgatttgtt 28709242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 735
Target Start/End: Complemental strand, 18149415 - 18149364
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgattt 735  Q
    |||||||||| |||| ||| | ||||||||||||||||||||||||||||||    
T  18149415 cttgtgcggggtgaaccaccttacttttgagcaatatatttcattttgattt 18149364  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 9194597 - 9194543
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||||||||||||||   ||||  ||||||||||||||||||||||||||    
T  9194597 cttgtgcgggatgaatcactctcctttaaagcaatatatttcattttgatttgtt 9194543  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 13390406 - 13390352
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||  ||||||||| ||||||| ||||||||||||||    
T  13390406 cttgtgcggggtgaatcacttctcttttgagctatatattccattttgatttgtt 13390352  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 24251324 - 24251378
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||| ||||||| |||||||||| |||||| ||||||    
T  24251324 cttgtgcggggtgaatcacttagcttttgaacaatatattttattttggtttgtt 24251378  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 26397340 - 26397286
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||||   ||||||||||||||||| ||||||||||||||    
T  26397340 cttgtgcggggtgaatcactcttcttttgagcaatatattccattttgatttgtt 26397286  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 688 - 738
Target Start/End: Complemental strand, 40632698 - 40632648
Alignment:
Q  688 tgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||| |||||||||   ||||||||||||||||||||||||||||||||    
T  40632698 tgcggggtgaatcactcttcttttgagcaatatatttcattttgatttgtt 40632648  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 735
Target Start/End: Complemental strand, 7123981 - 7123934
Alignment:
Q  688 tgcgggatgaatcacttaacttttgagcaatatatttcattttgattt 735  Q
    |||||| ||||||||||  |||||||| ||||||||||||||||||||    
T  7123981 tgcgggttgaatcactttgcttttgagaaatatatttcattttgattt 7123934  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 21825229 - 21825284
Alignment:
Q  684 cttgtgcgggatgaatcac-ttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||| ||  ||||||||||||||||| ||||||||||||||    
T  21825229 cttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgtt 21825284  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 23257188 - 23257242
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||  | ||||| ||||||||| ||||||||||||||    
T  23257188 cttgtgcggggtgaatcacttttcgtttgaacaatatattccattttgatttgtt 23257242  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 37268356 - 37268410
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||| |||| ||||||||||  | ||||||||||||||| ||||||||||||||    
T  37268356 cttgtacggggtgaatcacttttcctttgagcaatatattccattttgatttgtt 37268410  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 5675545 - 5675491
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||  |||||| |||||||||| ||||||||||||||    
T  5675545 cttgtgcggggtgaatcacttctcttttgtgcaatatattccattttgatttgtt 5675491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 18489759 - 18489813
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||| |  ||||||||||||||||| ||||||||||||||    
T  18489759 cttgtgcggggtgaatcacctttcttttgagcaatatattccattttgatttgtt 18489813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 16477681 - 16477626
Alignment:
Q  684 cttgtgcgggatgaatcac-ttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||| ||  ||||||||||||||||| ||||||||||||||    
T  16477681 cttgtgcggggtgaatcaccttttcttttgagcaatatattccattttgatttgtt 16477626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 4103137 - 4103083
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||   |||||||||||||||| |||||||| |||||    
T  4103137 cttgtgcggggtgaatcactttcattttgagcaatatattccattttgacttgtt 4103083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 12915781 - 12915835
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||| ||| ||||||||||  | ||||||||||||||||||||||||||||||    
T  12915781 cttgtgtggggtgaatcacttctcgtttgagcaatatatttcattttgatttgtt 12915835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 738
Target Start/End: Complemental strand, 33006732 - 33006689
Alignment:
Q  695 tgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||    
T  33006732 tgaatcactttacttttgagtaatatattttattttgatttgtt 33006689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 1206459 - 1206513
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||  |  | ||||||||||||||||||||||||||||||    
T  1206459 cttgtgcggggtgaatcatcttccatttgagcaatatatttcattttgatttgtt 1206513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 45701242 - 45701188
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||| || ||||||||||  ||||| ||||||||||| ||||||||||||||    
T  45701242 cttgtgctgggtgaatcacttttcttttaagcaatatattccattttgatttgtt 45701188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 738
Target Start/End: Original strand, 16898665 - 16898718
Alignment:
Q  685 ttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    ||||||||  ||||||||||  |||||||||||||||| |||||||||||||||    
T  16898665 ttgtgcggagtgaatcactttgcttttgagcaatatatctcattttgatttgtt 16898718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Original strand, 10773260 - 10773314
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| |||||||| |  ||||||||||||||||  ||||||||||||||    
T  10773260 cttgtgcggggtgaatcacctttcttttgagcaatatatcccattttgatttgtt 10773314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 735
Target Start/End: Complemental strand, 913 - 861
Alignment:
Q  683 acttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgattt 735  Q
    ||||||||||| ||||||||||  | ||||||||||||||| |||||||||||    
T  913 acttgtgcggggtgaatcacttttcatttgagcaatatattccattttgattt 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 738
Target Start/End: Complemental strand, 42243 - 42189
Alignment:
Q  684 cttgtgcgggatgaatcacttaacttttgagcaatatatttcattttgatttgtt 738  Q
    |||||||||| ||||||||||   ||||||| |||| ||||||||||||||||||    
T  42243 cttgtgcggggtgaatcactttgtttttgagtaataaatttcattttgatttgtt 42189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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