View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_high_4 (Length: 630)
Name: NF5885_high_4
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 4179264 - 4178648
Alignment:
| Q |
1 |
tgaggattactgcactcacaccatcacttaccacacgcctcagtggtaaccaataatatccctcttagaaaggttttctattgataacctagagtgctcc |
100 |
Q |
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||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179264 |
tgaggattactgcactcacaccaccacttacgctaggcctcagtggtaaccaataatatccctcttagaaaggttttctattgataacctagagtgctcc |
4179165 |
T |
|
| Q |
101 |
tccgactcatttcatatactctatgaatgaagaaaactctatattttacaagaaacgaagtgtgtcaaatgtttacactgaagg---atttatagactca |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4179164 |
tccgactcatttcatatactctatgaatgaagaaaactctatattttacaagaaacgaagtgtgtcaaatgtttacactgaaggtctatttatagactca |
4179065 |
T |
|
| Q |
198 |
ggaaagtcaaacactgtaataagctaatccaaaatagaattaaatctataaacaacagaagaaagttccatatcaaaaaccttaatttacaaattaaaac |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179064 |
ggaaagtcaaacactgtaataagctaatccaaaatagaattaaatctataaacaacagaagaaagttccatatcaaaaaccttaatttacaaattaaaac |
4178965 |
T |
|
| Q |
298 |
cctaacatcaaaactaaatgatccaatgaaatgtagtctatttgaaacatcaaagtctaagaatcatgattcatgtgaaatgaggtgtatcttgttataa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
4178964 |
cctaacatcaaaactaaatgatccaatgaaatgtagtctatttgaaacatcaaagtctaagaatcatgattcatgcgaaatgaggtgtatcttgttataa |
4178865 |
T |
|
| Q |
398 |
actttaagtagacaggtatatagcaccgacactttagattgaagatgtgtcggtgtccaacactgacccgtttggcttcattaaattatttcattttctc |
497 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178864 |
actttaagtagaaaggtatatagcaccgacactttagattgaagacgtgtcggtgtccaacactgacccgtttggcttcattaaattatttcattttctc |
4178765 |
T |
|
| Q |
498 |
acattattatcagtcgacggttagcgttgtatccagtgtctgtgtcagtgcttcatagatagaaagtgaacatcagacaatgcattcaatgttgaaggaa |
597 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178764 |
aaattattatcagtcgacggttagcgttgtatccagtgtctgcgtcagtgcttcatagatagaaagtgaacatcagacaatgcattcaatgttgaaggaa |
4178665 |
T |
|
| Q |
598 |
tatcttggtagatcagt |
614 |
Q |
| |
|
||||||||||||||||| |
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| T |
4178664 |
tatcttggtagatcagt |
4178648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 508
Target Start/End: Complemental strand, 20119983 - 20119951
Alignment:
| Q |
476 |
cattaaattatttcattttctcacattattatc |
508 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
20119983 |
cattaaattatttcattttctcaaattattatc |
20119951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 421 - 506
Target Start/End: Original strand, 34259760 - 34259846
Alignment:
| Q |
421 |
caccgacactttagattgaagatgtgtc-ggtgtccaacactgacccgtttggcttcattaaattatttcattttctcacattatta |
506 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||| ||| ||| | | | ||| |||||||||||||||||| ||||||| |
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|
| T |
34259760 |
caccgacactttggattgaaggcgtgtctggtgtccaacaccgacacgtctagttatattcaattatttcattttctcaaattatta |
34259846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 44514 - 44543
Alignment:
| Q |
418 |
tagcaccgacactttagattgaagatgtgt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
44514 |
tagcaccgacactttagattgaagatgtgt |
44543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 52065349 - 52065382
Alignment:
| Q |
414 |
tatatagcaccgacactttagattgaagatgtgt |
447 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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|
| T |
52065349 |
tatatagcaccgacactttagattaaagatgtgt |
52065382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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