View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_high_9 (Length: 496)
Name: NF5885_high_9
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_high_9 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 5669190 - 5668712
Alignment:
| Q |
1 |
tccagagtcccgacaaaaattgaacaagcgccgtaacttgaagaacaaaagactgtcaaggtctgaatcgatatttaaaatgaacaaatagcataannnn |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5669190 |
tccagagtccagacaaaaattgaacaagcgccgtaacttgaagaacaaaagactgtcaaggtctgaatcgatatttaaaatgaacaaatagcataatttt |
5669091 |
T |
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| Q |
101 |
nnnncttagtatggaacctggtaaaaaccagacttagtgcaacacaaataagaataatatatttctttttctaatannnnnnnnn--gtagtggccggg- |
197 |
Q |
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| T |
5669090 |
tt--cttagtatggaacctggtaaaaaccatacttagtgcaacacaaataagaataatatatttctttttctaataattttttttttgtagtggccgggg |
5668993 |
T |
|
| Q |
198 |
tttgaaccctatttatttatttaattatggatatatacacatccatcaatatttaaagttccttatcatttgcatacttttagtatttagaaaatatatg |
297 |
Q |
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||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5668992 |
tttgaaccctatttacttatttatttatagatatatacacatccatcaatatttaaagttccttatcatttgcatacttttagtctttagaaaatatatg |
5668893 |
T |
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| Q |
298 |
acacgtttatcacaaagtgcaaagttagtgttcattaaactattgcatattaattggaaaatgtgtgtgtgctgctactattcaatttacaggttagaga |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
5668892 |
acacgtttatcacaaagtgcaaagttagtgttcattaaactattgcatattaattggaaaatgtg--tgtgctgctactattcaatttacaggttaggga |
5668795 |
T |
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| Q |
398 |
caacccttcaggagattatgagaggatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatggt |
480 |
Q |
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| T |
5668794 |
caacccttcaggagattatgagagcatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatggt |
5668712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 369 - 479
Target Start/End: Complemental strand, 5688613 - 5688503
Alignment:
| Q |
369 |
ctgctactattcaatttacaggttagagacaacccttcaggagattatgagaggatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaag |
468 |
Q |
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||||| ||||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5688613 |
ctgctgctattcaatttgcaggttagggacaacccttcaggagattttgagagcatgtaccgtcatatctccaaagggtcatggaccttctctgatcaag |
5688514 |
T |
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| Q |
469 |
atcatggatgg |
479 |
Q |
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| T |
5688513 |
atcatggatgg |
5688503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 303 - 479
Target Start/End: Complemental strand, 5721408 - 5721241
Alignment:
| Q |
303 |
tttatcacaaagtgcaaagttagtgttcattaaactattgcatattaattggaaaatgtgtgtgtgctgctactattcaatttacaggttagagacaacc |
402 |
Q |
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| T |
5721408 |
tttatcaccaagttcaaagttagtgttcattaaactattgcctaat----ggacaattttt-----ctgctgctattcaatttgcaggttagggacaacc |
5721318 |
T |
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| Q |
403 |
cttcaggagattatgagaggatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatgg |
479 |
Q |
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| T |
5721317 |
cttcaggagattttgagagcatgtaccgtcatatctccaaagggtcatggacattctctgatcaagatcatggatgg |
5721241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 91751 - 91659
Alignment:
| Q |
387 |
caggttagagacaacccttcaggagattatgagaggatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatgg |
479 |
Q |
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| T |
91751 |
caggttagcgacaacccttctggagattttaagagtatgtatcgtcatatttctaaaggttcatggaccttctccgatcaagaccatggatgg |
91659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 479
Target Start/End: Complemental strand, 12136800 - 12136709
Alignment:
| Q |
388 |
aggttagagacaacccttcaggagattatgagaggatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatgg |
479 |
Q |
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||||| ||||||||||||||||||||| | |||| ||| | |||||||| || ||||| |||||||||||||| |||||||| ||||||||| |
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| T |
12136800 |
aggttcgagacaacccttcaggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatgg |
12136709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 13053539 - 13053632
Alignment:
| Q |
386 |
acaggttagagacaacccttcaggagattatgagaggatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatgg |
479 |
Q |
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||||||||||||||||||||||||||||| | |||| ||| | |||||||| || ||||| | ||||| ||||| |||||||| ||||||||| |
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| T |
13053539 |
acaggttagagacaacccttcaggagattttaagagtatgcatcgtcatatttctaaaggtgcgtggactttctccgatcaagaccatggatgg |
13053632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 105026 - 105119
Alignment:
| Q |
386 |
acaggttagagacaacccttcaggagattatgagaggatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatgg |
479 |
Q |
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|||||||| ||| |||||||| ||||||| | |||| ||| | |||||||| || ||||| |||||||||||||| |||||||| ||||||||| |
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| T |
105026 |
acaggttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatgg |
105119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 165656 - 165749
Alignment:
| Q |
386 |
acaggttagagacaacccttcaggagattatgagaggatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatgg |
479 |
Q |
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||||||||| ||||||||||| ||||||| |||| ||||| |||||||| || ||||| || |||||||||||||||||||| || |||||| |
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| T |
165656 |
acaggttagggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtggaccttctctgatcaagaccaaggatgg |
165749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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