View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_1 (Length: 928)
Name: NF5885_low_1
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 738; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 14 - 838
Target Start/End: Original strand, 9731707 - 9732529
Alignment:
| Q |
14 |
atataacatcgaaagcagaaacgaaaattatacaaacaaaacgcgaataccttaggaaaacaaaagcatctccggccaccaatcttttggatgcgacaaa |
113 |
Q |
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| T |
9731707 |
atataacatcgaaagcagaaacgaaaattatacaaacaaaacccgaataccttaggaaaacaaaagcatctccggccaccaatcttttggatgcgacaaa |
9731806 |
T |
|
| Q |
114 |
tgtactccagccggttgtaagcaagtgcctcctcggttgacctgatcacagtagtggaagggatataagaaccatgtcgcttccatttctcattcaatgc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9731807 |
tgtactccagccggttgtaagcaagtgcctcctcggttgacctgatcacagtagtggaagggatataagaaccatgtcacttccatttctcattcaatgc |
9731906 |
T |
|
| Q |
214 |
aaatcatagaattcattcattcaagaatttgaatatgacactaaaattagagaatgaaaataagactacaaattacctctatatatgtgtttaaacttcc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9731907 |
aaatcatagaattcattcattcaagaatttgaatatgacactaaaattagagaatgaaaataagactacaaattacctctatatatgtgtttaaacttcc |
9732006 |
T |
|
| Q |
314 |
actcaaatccatgaagatcctttgctgctagctcctgagttggagttgctggtgtcatgtcctacgatatacataaacaaaaatcatttgaaattaagnn |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9732007 |
actcaaatccatgaagatcctttgctgctagctcctgagttggagttgctggtgccatgtcctacgatatacataaacaaaaatcatttgaaattaag-a |
9732105 |
T |
|
| Q |
414 |
nnnnnnnnnntgatagcatcatccaaagaaactcggtaagaaaattaccaatggcggcaagcactcggtagcatgtttcctcagaactgaaaatccacca |
513 |
Q |
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| T |
9732106 |
aaaatcaaaatgatagcatcatccaaagaaactcggtaagaaaattaccaatggcggcaagcactcggtagcatgtttcctcagaactgaaaatccacca |
9732205 |
T |
|
| Q |
514 |
tgtgtgctagtatcagatgcagttaatattttgcaaaatgagtgaaacttctgttttggagaaccagaaggatttggatcaggatctacaggctcagttt |
613 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9732206 |
tgtgtgctagtatcagatgcagttaatattttgcaaaatgagtgaaacttctgttttggagaatcagaaggatttggatcaggatctacaggctcagttt |
9732305 |
T |
|
| Q |
614 |
gctgcacaaaaccatcaagagaaaccaaaactagtttcagaaacagttaaaaacttttnnnnnnnctcacttttcaacatggaatattttcctttagcac |
713 |
Q |
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| T |
9732306 |
gctgcacaaaaccatcaagagaaaccaaaactagtttcagaaacagttaaaaactttt-aaaaaactcacttttcaacatggaatattttcctttagcac |
9732404 |
T |
|
| Q |
714 |
tagatatcttatgaaaaaacaagattgaattagttatgcaaagaatgagaaatatctcacatctgattctggaagcaaagcaacacaagcataaacctca |
813 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9732405 |
tagatatcttatgaaaaaacaagattgaattagatatgcaaagaatgagaaatatctcacatctgattctggaagcaaagcaacacaagcataaacctca |
9732504 |
T |
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| Q |
814 |
tcagtttcttgctcagcctacaaac |
838 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
9732505 |
tcagtttcttgctcagcctacaaac |
9732529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 559
Target Start/End: Original strand, 7076555 - 7076630
Alignment:
| Q |
484 |
gcatgtttcctcagaactgaaaatccaccatgtgtgctagtatcagatgcagttaatattttgcaaaatgagtgaa |
559 |
Q |
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||||||||||| ||||| || || ||||||||||| |||||||| || || ||||| || ||||| |||||||||| |
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| T |
7076555 |
gcatgtttcctgagaacagagaagccaccatgtgtactagtatccgaagcggttaagatcttgcagaatgagtgaa |
7076630 |
T |
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