View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_10 (Length: 493)
Name: NF5885_low_10
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 9075579 - 9075813
Alignment:
| Q |
18 |
agaggttcatttatcattatctatgcaaacacactcatagtttcgtaattgttcctcaaaaaggatttttgaatttattagtgtgaaatatagcaaacca |
117 |
Q |
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| T |
9075579 |
agaggttcatttatcattatctatgcaaacacactcatagttt-gtaattgttcctcaaaaaggatttttgaatttattagtgtgaaatatagcaaacca |
9075677 |
T |
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| Q |
118 |
attatttgaggagcttcgattgcagtgattagatttaaaac-tttaacacttgaatttcaattttttggtataatattgaatcctttaccatccatttgt |
216 |
Q |
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| T |
9075678 |
attatttgagaagcttcgattgcagtgattagatttaaaacttttaacacttgaatttcaattttttggtataatattgaatcctttaccatccatttat |
9075777 |
T |
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| Q |
217 |
caaagttcactctaaagttatttaaattcacacatg |
252 |
Q |
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| T |
9075778 |
caaagttcactctaaagttatttaaattcacacatg |
9075813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 317 - 464
Target Start/End: Original strand, 9075878 - 9076026
Alignment:
| Q |
317 |
atctgcgaatctgttgcatgtaatgtttggtttgtcttttagtttaagttaattaaatttgaagtttgaaag-catcttggacgttggttaatttgaata |
415 |
Q |
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| T |
9075878 |
atctgcgaatctgttgcatgtaatgtttgttttgtcttttagtttaagttaattaaatttgaagtttgaaagacatcttggacgttggttaatttgaata |
9075977 |
T |
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| Q |
416 |
gaatgattggttgaacttatagttgtgctgaaatttgaaatcgtatcat |
464 |
Q |
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| T |
9075978 |
gaatgattggttgaacttatagttgtgctgaaatttgaaattgtatcat |
9076026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 8533678 - 8533506
Alignment:
| Q |
75 |
aaaaaggatttttgaatttattagtgtgaaatatagcaaaccaattatttgaggagcttcgattgcagtgattagatttaaaactttaacacttgaattt |
174 |
Q |
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| T |
8533678 |
aaaaaggattttggaatttccaagtgtgatatacagtgaaccaattatttgaggagctttgattgcattgactagatttaaaacttcaacagttgaattt |
8533579 |
T |
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| Q |
175 |
caattttttggtataatattgaatcctttaccatccatttgtcaaagttcactctaaagttatttaaattcacacatg |
252 |
Q |
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| T |
8533578 |
caattttttggtataatattgaatcatttaccatccttttgtc-aagttcactc----gttatttaaattcagacatg |
8533506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 8640062 - 8639949
Alignment:
| Q |
143 |
tgattagatttaaaacttt-aacacttgaatttcaatttttt-ggtataatattgaatcctttaccatc---catttgtcaaagttcactctaaagttat |
237 |
Q |
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|||||| |||||||||||| |||| |||||||||||||||| || || ||| |||| ||||||||||| | |||||||| ||||||| ||||||||| |
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| T |
8640062 |
tgattaaatttaaaacttttaacaaatgaatttcaatttttttggcatgatagtgaaccctttaccatcatccttttgtcaa-gttcactttaaagttat |
8639964 |
T |
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| Q |
238 |
ttaaattcacacatg |
252 |
Q |
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| T |
8639963 |
ttaaattcagacatg |
8639949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 8677101 - 8676994
Alignment:
| Q |
149 |
gatttaaaacttt-aacacttgaatttcaatt-ttttggtataatattgaatcctttac---catccatttgtcaaagttcactctaaagttatttaaat |
243 |
Q |
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||||||||||||| |||| ||||||||||||| |||||| || |||||||| ||||||| ||||| |||||| ||||||||| | | ||||||||||| |
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| T |
8677101 |
gatttaaaacttttaacaattgaatttcaatttttttggcatgatattgaaccctttaccatcatccttttgtc-aagttcactttgacgttatttaaat |
8677003 |
T |
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| Q |
244 |
tcacacatg |
252 |
Q |
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| T |
8677002 |
tcagacatg |
8676994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 8534039 - 8533941
Alignment:
| Q |
143 |
tgattagatttaaaactttaacacttgaatttcaattttt-tggtataatattgaatcctttaccatccatttgtcaaagttcactctaaagttatttaa |
241 |
Q |
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| T |
8534039 |
tgattagatttaaaa-tttaatgattgaatttcaattttggtggcatgatattgaaccctttac-atccttttgtcac-gttcactttaaagttatttaa |
8533943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 26325505 - 26325615
Alignment:
| Q |
75 |
aaaaaggatttttgaatttattagtgtgaaatatagcaaaccaattatttgaggagcttcgattgcagt-gattagatttaaaactttaacacttgaatt |
173 |
Q |
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||||||||||| |||||| ||||||||||| || |||||||||||||| |||||| ||||||| | | ||||||||||||||| |||| ||||||| |
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| T |
26325505 |
aaaaaggatttcggaatttccaagtgtgaaatacagtgaaccaattatttgatgagctttgattgcattggtttagatttaaaacttcaacagttgaatt |
26325604 |
T |
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| Q |
174 |
tcaattttttg |
184 |
Q |
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||||| ||||| |
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| T |
26325605 |
tcaatcttttg |
26325615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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