View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_11 (Length: 486)
Name: NF5885_low_11
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 36288737 - 36288386
Alignment:
| Q |
16 |
gttcaatttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggtaggccttc |
115 |
Q |
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| T |
36288737 |
gttcaatttgaggttttgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggtaggccttc |
36288638 |
T |
|
| Q |
116 |
aatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaaga-gat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
36288637 |
aatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaagaggtt |
36288538 |
T |
|
| Q |
215 |
ttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgcaaaggagaaggag |
314 |
Q |
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| T |
36288537 |
ttgtctccctttttggctaatatgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggagacattgctatgtgcaaagaagaatgtg |
36288438 |
T |
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| Q |
315 |
catccatggctgctattttctgaattccttagcaatgtctctatgcttataa |
366 |
Q |
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| T |
36288437 |
gatccaaggctgctattttctgaattacttggcaatatctctctgcttataa |
36288386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 485
Target Start/End: Original strand, 35036740 - 35037211
Alignment:
| Q |
8 |
gagaagaagttcaatttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaagggt |
107 |
Q |
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| T |
35036740 |
gagaagaagttcaacttgaggctgtgtttgatccatagctgtcatgatgagtggacctaaagagaatgagacatctgaagtggtttcagcaccaaatgga |
35036839 |
T |
|
| Q |
108 |
aggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaaga |
207 |
Q |
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|| || | ||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||| |||||| ||||||||||||||| |||| ||||||| |
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| T |
35036840 |
agaccatgaatgtgaggaacattgagagggtaaaaagtgatgagatttggataaaggttgaattgttctaatttggtttgtgttttcgtgggaatgaaga |
35036939 |
T |
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| Q |
208 |
aagaga-tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgcaaagg |
306 |
Q |
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|||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35036940 |
aagagattttgtgtccccttttggctaatttgtttgagagatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatgtgcaaaga |
35037039 |
T |
|
| Q |
307 |
agaaggagcatccatggctgctattttctgaattccttagcaatgtctctatgcttataacttataaggtcttatataaaatacaga-gaattctggatc |
405 |
Q |
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||| || | |||||||||||| || |||||| | ||||||||||| ||| || ||||||||||| ||||||||||| ||| |||||||||||| |
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| T |
35037040 |
agatggtgactccatggctgct-ttgtctgaactacttagcaatgtttctctg-------cttataaggtc-tatataaaataaagaggaattctggatc |
35037130 |
T |
|
| Q |
406 |
tagcagactctagaaaacaat-aaaaaattaagcatataataatgaaaactataaaagtagtgggtgtgatataataatca |
485 |
Q |
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||||| |||||| |||||||| |||||||||||||||||||||| | || ||||||||||| ||||||||||||||||| |
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| T |
35037131 |
tagcatactctacaaaacaataaaaaaattaagcatataataatcacaaatataaaagtagcaagtgtgatataataatca |
35037211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 35009197 - 35008874
Alignment:
| Q |
4 |
gagtgagaagaagttcaatttgaggttgtgtttgatccatagctgtcatgatgagtggacctaaagagaaagagacatctgaagtggtttcagcgccaaa |
103 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
35009197 |
gagtgagaagaagttcaacttgaggttgagtttgatccatagctgtcatgatgagtggacctaaagagaatgagacatctgaagtggtttcagcaccaaa |
35009098 |
T |
|
| Q |
104 |
gggtaggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatg |
203 |
Q |
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|| || || | ||| ||||||||||||||||||||||| ||||| | ||||| ||||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
35009097 |
tggaagaccatgaatatgaggaacattgagagggtaaaaagtgattaaatttggataaaggttgaattgttctaatttggtttgtgttttcttgggaatg |
35008998 |
T |
|
| Q |
204 |
aagaaagaga-tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgca |
302 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
35008997 |
aagaaagagattttgtgtccccttttggctaatttgtttgagagatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatgtgca |
35008898 |
T |
|
| Q |
303 |
aaggagaaggagcatccatggctg |
326 |
Q |
| |
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||| ||| || | |||||||||| |
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| T |
35008897 |
aagaagatggtgactccatggctg |
35008874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 78 - 308
Target Start/End: Complemental strand, 35026387 - 35026156
Alignment:
| Q |
78 |
acatctgaagtggtttcagcgccaaagggtaggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttcta |
177 |
Q |
| |
|
|||||||||| |||||||| ||| ||| || || ||||||||||||||||||||||||||||| ||||| || ||||||| ||||||| | || || |
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| T |
35026387 |
acatctgaagatgtttcagcaccatcgggaagaccatcaatgtgaggaacattgagagggtaaaaagtgatgagatttgggtttaggttgagatgttgta |
35026288 |
T |
|
| Q |
178 |
acttggtttgtgttttcttggggatgaagaaagaga-tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgc |
276 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | |||||| || ||||| ||||||||||| ||||||||||||||||| | | ||||||||| || |
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| T |
35026287 |
acttggtttgtgtttttttggggatgaagaatgatattttgtgacctttttttgctaatttgttggagaggtgaagatatggggtgaagtgtcccatagc |
35026188 |
T |
|
| Q |
277 |
aaaccatggaaacattgctatatgcaaaggag |
308 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
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| T |
35026187 |
aaaccatggaaacattgctatgtgcaaaggag |
35026156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 331
Target Start/End: Original strand, 35019417 - 35019518
Alignment:
| Q |
230 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgcaaaggagaaggagcatccatggctgcta |
329 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
35019417 |
gctaatttgttggagaagtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgtgcaaaggagaaggagcatccattactgcta |
35019516 |
T |
|
| Q |
330 |
tt |
331 |
Q |
| |
|
|| |
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|
| T |
35019517 |
tt |
35019518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 35033243 - 35033150
Alignment:
| Q |
230 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgcaaaggagaaggagcatccatgg |
323 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||| |
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| T |
35033243 |
gctaacttgtttgagaggtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgtgtaaaggaggaggagcatccatgg |
35033150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 329
Target Start/End: Original strand, 35012391 - 35012490
Alignment:
| Q |
230 |
gctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgcaaaggagaaggagcatccatggctgcta |
329 |
Q |
| |
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|||||||||||||||| ||| |||||||| | | |||||||| ||||||||||||||||||| |||||||| ||||| | |||||||||||||||||| |
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| T |
35012391 |
gctaatttgtttgagaagtggagatatggggtgaaatgtcccatagcaaaccatggaaacattgatatatgcataggaggaagagcatccatggctgcta |
35012490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 307
Target Start/End: Original strand, 34998904 - 34998980
Alignment:
| Q |
231 |
ctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgcaaagga |
307 |
Q |
| |
|
|||||||||| |||||| | | | ||||| || ||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
34998904 |
ctaatttgttagagaggcggataaatggagttgagtgtcccatagcaaaccatggaaacattgctatgtgcaaagga |
34998980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 30595238 - 30595333
Alignment:
| Q |
214 |
tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgcaaaggaga |
309 |
Q |
| |
|
|||||| || ||||| |||| |||||||| || ||||| ||||| || |||| |||||||||||||||||| |||||||||| || |||||||| |
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| T |
30595238 |
tttgtgacctttttttgctagtttgtttgctagatgaaggaatggagtttggtggcccattgcaaaccatggatacattgctatgtgtaaaggaga |
30595333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 309
Target Start/End: Original strand, 30612586 - 30612681
Alignment:
| Q |
214 |
tttgtgtccctttttggctaatttgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggaaacattgctatatgcaaaggaga |
309 |
Q |
| |
|
|||||| || ||||| |||| |||||||| || ||||| ||||| || |||| |||||||||||||||||| |||||||||| || |||||||| |
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|
| T |
30612586 |
tttgtgacctttttttgctagtttgtttgctagatgaaggaatggagtttggtggcccattgcaaaccatggatacattgctatgtgtaaaggaga |
30612681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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