View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_12 (Length: 457)
Name: NF5885_low_12
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 445
Target Start/End: Original strand, 51273692 - 51274120
Alignment:
| Q |
17 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51273692 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctca |
51273791 |
T |
|
| Q |
117 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51273792 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagaaaaaaacatgtcttatattc |
51273891 |
T |
|
| Q |
217 |
gagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273892 |
gagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaa |
51273991 |
T |
|
| Q |
317 |
cttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51273992 |
cttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaa |
51274091 |
T |
|
| Q |
417 |
agaaagtatctttcaaccatcacaggttc |
445 |
Q |
| |
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| T |
51274092 |
agaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
51 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
92 |
Q |
| |
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| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 93 - 390
Target Start/End: Original strand, 14907797 - 14908094
Alignment:
| Q |
93 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
192 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
193 |
aagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaac |
292 |
Q |
| |
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||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
|
| Q |
293 |
atcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
390 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||| | ||||||||||||| |||||| ||||||| ||||| |
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| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 5051674 - 5051458
Alignment:
| Q |
17 |
actttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttcgttctcaccaaatctta |
116 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||| | | ||||||| | ||||| |
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| T |
5051674 |
actttggtccaacaaatgaaagaagaagaaaaccagaaaag-tagcacttcaattttatctcaaagcgtaaactcctcgtatggttctcatccaatctcc |
5051576 |
T |
|
| Q |
117 |
atctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataacaagnnnnnnncatgtcttatattc |
216 |
Q |
| |
|
||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| |||||||| |||||||||||||| ||| ||||||||| |
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| T |
5051575 |
atctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatcat-ccttatattc |
5051477 |
T |
|
| Q |
217 |
gagaattgtcggattttca |
235 |
Q |
| |
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||||||||| ||||||||| |
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| T |
5051476 |
gagaattgttggattttca |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 445
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
291 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
389 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
|
| Q |
390 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
445 |
Q |
| |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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