View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_15 (Length: 402)
Name: NF5885_low_15
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 116 - 386
Target Start/End: Complemental strand, 31553913 - 31553643
Alignment:
| Q |
116 |
gtgattgaatatatgcataaaaatttttacactattttttgatgagtcgttccttccattcacattaacacaaggtatgaaactttgacccgtttaaaga |
215 |
Q |
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| T |
31553913 |
gtgattgaatatatgcataaaattttttacactattttttgatgagtcgttccttccaatcacattaacacaaggtatgaaactttgacccgtttaaaga |
31553814 |
T |
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| Q |
216 |
tttgaatatagttccactcgaacaaatatgatattgataaatttggtacgatgatacatatctattaaactcataaaggaaaaaataaaataaaggtgca |
315 |
Q |
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| T |
31553813 |
tttgaatatagttccactcgaacaaatatgatattgataaatttggtacgatgatacatatctattaaactcataaaggaaaaaataaaataaaggtgca |
31553714 |
T |
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| Q |
316 |
tgcaccttgatggctctacggtaggtggtagagaaaagaggaaatgggagagtgaaaaacccttcaattac |
386 |
Q |
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| T |
31553713 |
tgcaccttgatggctctacggtaggtggtagagaaaagaggaaatgggagagtgaaaaacccttcaattac |
31553643 |
T |
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