View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5885_low_17 (Length: 388)

Name: NF5885_low_17
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5885_low_17
NF5885_low_17
[»] chr3 (5 HSPs)
chr3 (13-372)||(43597891-43598253)
chr3 (85-159)||(33068264-33068338)
chr3 (247-321)||(39396587-39396661)
chr3 (85-161)||(27786528-27786604)
chr3 (85-121)||(8380471-8380507)
[»] chr5 (3 HSPs)
chr5 (90-140)||(7135329-7135379)
chr5 (91-146)||(39231871-39231926)
chr5 (85-146)||(38244157-38244218)
[»] chr2 (4 HSPs)
chr2 (85-159)||(34360838-34360912)
chr2 (92-159)||(36446985-36447052)
chr2 (91-159)||(33853824-33853892)
chr2 (86-142)||(34138768-34138824)
[»] chr1 (4 HSPs)
chr1 (98-140)||(5091755-5091797)
chr1 (83-142)||(42074203-42074262)
chr1 (88-142)||(11016664-11016718)
chr1 (86-132)||(46673860-46673906)
[»] chr4 (6 HSPs)
chr4 (85-142)||(25129762-25129818)
chr4 (85-146)||(32125410-32125471)
chr4 (85-146)||(47493208-47493269)
chr4 (104-146)||(51333452-51333494)
chr4 (93-146)||(33004250-33004303)
chr4 (85-121)||(25233615-25233651)
[»] chr8 (4 HSPs)
chr8 (85-144)||(108202-108261)
chr8 (89-142)||(11334255-11334308)
chr8 (89-142)||(30857305-30857358)
chr8 (104-160)||(4079554-4079610)
[»] chr7 (3 HSPs)
chr7 (97-163)||(16970312-16970378)
chr7 (85-146)||(42926992-42927053)
chr7 (91-144)||(47877881-47877934)
[»] chr6 (2 HSPs)
chr6 (85-159)||(7055630-7055704)
chr6 (92-142)||(26478521-26478571)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 43597891 - 43598253
Alignment:
Q  13 aatattcatgtaagtgtgttagattatcgatctt---tgcgaggttattacacaaaaatgcagctattgaacttaatagatcaaatatattagatattca 109  Q
    ||||||||||||||||||||||||||||||||||   || |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43597891 aatattcatgtaagtgtgttagattatcgatcttctttgagaggttcttacacaaaaatgcagctattgaacttaatagatcaaatatattaggtattca 43597990  T
Q  110 ataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgtgtatttgacaagaaaatgggagaacttggatgttatgtgacatatttt 209  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43597991 ataaacttaaaaagtagttttttgtttataaatatgagcagatgaagtatgtgtatttgacaagaaaatgggagaacttggatgttatgtgacatatttt 43598090  T
Q  210 gattcaataaaattgttgaaccaaataagtacaggttaccattgctttaaattgttagcgtaacatctatgaagttaacgtttttggtagcttttgctta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43598091 gattcaataaaattgttgaaccaaataagtacaggttaccattgctttaaattgttagcgtaacatctatgaagttaacgtttttggtagcttttgctta 43598190  T
Q  310 tttggaacatgagctacacaataatttaattcaggcattacaaacagtatttaggaagttgtt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43598191 tttggaacatgagctacacaataatttaattcaggcattacaaacagtatttaggaagttgtt 43598253  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 33068264 - 33068338
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 159  Q
    ||||| ||||||||||| ||||||||| ||  |||||  || |||||||||||||||||||| | ||||||||||    
T  33068264 atagaccaaatatattaaatattcaatgaatgtaaaaaataattttttgtttataaatatgatcggatggagtat 33068338  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 39396587 - 39396661
Alignment:
Q  247 accattgctttaaattgttagcgtaacatctatgaagttaacgtttttggtagcttttgcttatttggaacatga 321  Q
    |||||||||| ||||||||   ||||||||||  |||||| | |||| || ||||||||||||||||||||||||    
T  39396587 accattgcttaaaattgttgatgtaacatctacaaagttatctttttcggcagcttttgcttatttggaacatga 39396661  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 27786528 - 27786604
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgt 161  Q
    ||||| |||||||||||| |||||||| ||||||||| || || ||||| |||||||| ||| | || |||||||||    
T  27786528 atagaccaaatatattaggtattcaatgaacctaaaaagttgtgttttgcttataaatgtgatcggagggagtatgt 27786604  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 8380507 - 8380471
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaa 121  Q
    |||||||||||||||||  ||||||||||||||||||    
T  8380507 atagatcaaatatattaattattcaataaacctaaaa 8380471  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 7135329 - 7135379
Alignment:
Q  90 tcaaatatattagatattcaataaacctaaaaggtagttttttgtttataa 140  Q
    ||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  7135329 tcaaatatattagttattcaataaatctaaaacgtagttttttgtttataa 7135379  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 39231871 - 39231926
Alignment:
Q  91 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 146  Q
    |||||| ||| |||||| ||| |||||||||  |||||||||||||||||||||||    
T  39231871 caaatacatttgatattaaatgaacctaaaaaatagttttttgtttataaatatga 39231926  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 38244157 - 38244218
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 146  Q
    |||||||||||| ||||||| |||||| || |||||| | | | ||||||||||||||||||    
T  38244157 atagatcaaatacattagatgttcaatgaatctaaaaagcactcttttgtttataaatatga 38244218  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 34360838 - 34360912
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 159  Q
    |||||||||||| |||  ||||||||| ||||||||| |||  |||||  |||||||||||| ||||||||||||    
T  34360838 atagatcaaatacattgtatattcaatgaacctaaaaagtacatttttacttataaatatgatcagatggagtat 34360912  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 36447052 - 36446985
Alignment:
Q  92 aaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 159  Q
    |||||||||||||||| ||||||  ||||| || | |||||| |||||||||||| |||||| |||||    
T  36447052 aaatatattagatatttaataaatttaaaaagttgatttttgcttataaatatgatcagatgaagtat 36446985  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 33853892 - 33853824
Alignment:
Q  91 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 159  Q
    |||||| ||||  |||||||| ||||||||| |||  ||||||||||||||||||| | |||| |||||    
T  33853892 caaatacattatgtattcaatgaacctaaaaagtacatttttgtttataaatatgaccggatgaagtat 33853824  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 34138768 - 34138824
Alignment:
Q  86 tagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 142  Q
    ||||| |||||||| |  ||||||||||||||||||  | |||||||||||||||||    
T  34138768 tagatgaaatatatcaattattcaataaacctaaaaaattgttttttgtttataaat 34138824  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 5091755 - 5091797
Alignment:
Q  98 attagatattcaataaacctaaaaggtagttttttgtttataa 140  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  5091755 attagttattcaatgaacctaaaaggtagttttttgtttataa 5091797  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 42074203 - 42074262
Alignment:
Q  83 taatagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 142  Q
    ||||||| ||||||||||||  ||||||| |||||||||  |||||||||| ||||||||    
T  42074203 taatagaccaaatatattaggcattcaatgaacctaaaaaatagttttttgcttataaat 42074262  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 11016664 - 11016718
Alignment:
Q  88 gatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 142  Q
    ||||| ||| ||||| |||||||||||||||||| || | |||||||||||||||    
T  11016664 gatcatatacattagttattcaataaacctaaaaagttgatttttgtttataaat 11016718  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 46673906 - 46673860
Alignment:
Q  86 tagatcaaatatattagatattcaataaacctaaaaggtagtttttt 132  Q
    |||| ||||||||||||||||||||| || |||||| ||||||||||    
T  46673906 tagaccaaatatattagatattcaatgaatctaaaaagtagtttttt 46673860  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 25129762 - 25129818
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 142  Q
    |||||||||||||||||||||||||||||| ||||||  | |||||||| ||||||||    
T  25129762 atagatcaaatatattagatattcaataaatctaaaa-tttgttttttgattataaat 25129818  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 32125410 - 32125471
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 146  Q
    ||||| || ||| |||||||||||||| ||||||||| |||| |||||| ||||||||||||    
T  32125410 atagaccacatacattagatattcaatgaacctaaaaagtagatttttgcttataaatatga 32125471  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 47493269 - 47493208
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 146  Q
    ||||| |||||| ||||| ||||||||||| |||||| ||||||||||  ||||||||||||    
T  47493269 atagaccaaatacattaggtattcaataaatctaaaaagtagttttttacttataaatatga 47493208  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 51333494 - 51333452
Alignment:
Q  104 tattcaataaacctaaaaggtagttttttgtttataaatatga 146  Q
    |||||||||||  ||||| ||||||||||||||||||||||||    
T  51333494 tattcaataaatttaaaaagtagttttttgtttataaatatga 51333452  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 33004250 - 33004303
Alignment:
Q  93 aatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 146  Q
    |||| |||||||||||||||||| ||||| || |||||||  ||||||||||||    
T  33004250 aatacattagatattcaataaacttaaaatgttgtttttttcttataaatatga 33004303  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 25233651 - 25233615
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaa 121  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  25233651 atagaccaaatatattagatattcaataaatctaaaa 25233615  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 108261 - 108202
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatat 144  Q
    ||||| ||||||||| | ||||||||| ||||||||| ||| |||||| |||||||||||    
T  108261 atagaccaaatatatcatatattcaatgaacctaaaaagtaattttttatttataaatat 108202  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 11334308 - 11334255
Alignment:
Q  89 atcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 142  Q
    ||||||||||||| |||||||||||| ||||||   |||||||| |||||||||    
T  11334308 atcaaatatattaaatattcaataaatctaaaaaagagttttttatttataaat 11334255  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 30857305 - 30857358
Alignment:
Q  89 atcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 142  Q
    ||||||||||||||  |||||||||| |||||| ||| ||||||| ||||||||    
T  30857305 atcaaatatattaggcattcaataaatctaaaaagtaattttttgcttataaat 30857358  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 4079554 - 4079610
Alignment:
Q  104 tattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatg 160  Q
    |||||||| |||||||||  | ||||||||||||||||||||| | |||| ||||||    
T  4079554 tattcaatgaacctaaaaaattgttttttgtttataaatatgaccggatgaagtatg 4079610  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 16970312 - 16970378
Alignment:
Q  97 tattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtatgtgt 163  Q
    |||||| |||||||| ||| ||||| ||||||||| |||||||||||||| | |||  |||||||||    
T  16970312 tattagttattcaatgaacttaaaaagtagtttttagtttataaatatgatcggattaagtatgtgt 16970378  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 42927053 - 42926992
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatga 146  Q
    |||||||||||| ||||| |||||||| || |||| | || | |||||||||||||||||||    
T  42927053 atagatcaaatacattagttattcaatgaatctaagaagttgatttttgtttataaatatga 42926992  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 47877934 - 47877881
Alignment:
Q  91 caaatatattagatattcaataaacctaaaaggtagttttttgtttataaatat 144  Q
    |||||||||||  |||||||||||| ||||| |||  |||||||||||||||||    
T  47877934 caaatatattatgtattcaataaacttaaaaagtacatttttgtttataaatat 47877881  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 7055630 - 7055704
Alignment:
Q  85 atagatcaaatatattagatattcaataaacctaaaaggtagttttttgtttataaatatgagcagatggagtat 159  Q
    |||||||||||||||||  |||||||| ||||||||| |||  |||||| |||||||| ||| | || |||||||    
T  7055630 atagatcaaatatattatgtattcaatgaacctaaaaagtacatttttgcttataaatgtgatcggagggagtat 7055704  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 26478521 - 26478571
Alignment:
Q  92 aaatatattagatattcaataaacctaaaaggtagttttttgtttataaat 142  Q
    ||||| ||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  26478521 aaatacattaggtattcaataaacctaaaaagtagtgttttgcttataaat 26478571  T

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