View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_20 (Length: 366)
Name: NF5885_low_20
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 32 - 351
Target Start/End: Original strand, 29894732 - 29895061
Alignment:
| Q |
32 |
ggaccaaaactaagtgactttcatatgggagatcaatttcgtaagcaagtgcaagtaaagggaccaaaatcgtaattaactattttattttgtaattcta |
131 |
Q |
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| T |
29894732 |
ggaccaaaactaagcgactgtcatatggaagacca-tttcgtaagcaagtgtaagtaaagggaccaaaatcgtaattaacttttttattttgtaattcta |
29894830 |
T |
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| Q |
132 |
ttctttgattatttgattatgtattttgttccatctattgttcataaattattacatacaattttaaatagaaaacatttaatacaccatatagtataga |
231 |
Q |
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| T |
29894831 |
ttctttgattatttgattatgtattttgttccatctattgttcataaattattacatacaattttaaatagaaaacatttaatataccatatagtataga |
29894930 |
T |
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| Q |
232 |
tatataagtcattttttatataaaatgaggcagctttagttttaaattgccgaactggtactgtttcttttttgta-----------aattggtggagat |
320 |
Q |
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| T |
29894931 |
tatataagtcattttttatataaaatgaggcagctttagttttaaattgtcgaactggtactgtttcttttttgtatttagtctgccaattggtggagat |
29895030 |
T |
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| Q |
321 |
tgtcgtcgtcttcagttttagtatctttatt |
351 |
Q |
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| T |
29895031 |
tgtcgtcgtcttcagttttagtatctttatt |
29895061 |
T |
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