View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_21 (Length: 329)
Name: NF5885_low_21
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 43633503 - 43633804
Alignment:
| Q |
19 |
atgctggccagtttgtgctcatgacaaatccacatattgggaatactggcataaattttggtttgtatctatttatttatatactaattataatcacttg |
118 |
Q |
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| T |
43633503 |
atgctggccagtttgtgctcatgacaaatccacatattgggaatactggcataaattttggtttgtatctatttatttatatactaattataatcactta |
43633602 |
T |
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| Q |
119 |
aatccttgtgcttagagtccattttaaaaaccatcttttgattcattgtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43633603 |
aatccttgtgcttagagtccattttaaaaaccatcttttgattcattgtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaatt |
43633702 |
T |
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| Q |
219 |
agaagtttgagtatcaggttcttttctcgtgctttgcaaatattttccgttcattgagctttacttacttttgtccatacttgctctttgtctcttccta |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
43633703 |
agaagtttgagtatcaggttctgttctcgtgctttgcaaatattttccgttcattgagctttacttacttttgcccatacttactctttgtctcttccta |
43633802 |
T |
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| Q |
319 |
tg |
320 |
Q |
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|| |
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| T |
43633803 |
tg |
43633804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 42961728 - 42961975
Alignment:
| Q |
19 |
atgctggccagtttgtgctcatgacaaatccacatattgggaatactggcataaattttggtttgtatctatttatttatatactaattataatcacttg |
118 |
Q |
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||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| || | |||| | ||| || |
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| T |
42961728 |
atgctggacagtttgttctcatgacaaatccgcatattgggaatactggcataaattttggttggtatctatttat----attc-aattct---cacctg |
42961819 |
T |
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| Q |
119 |
aatccttgtgcttagagtccattttaaaaaccatcttttgattcattgtctgtcagatgatgaagaatcaacagagtgcttcctttccggtctagtaatt |
218 |
Q |
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|||||||||| || ||| || |||||||||||| |||| | || ||||||||||||||| || |||||||| ||||||| ||||| |||||||||||| |
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| T |
42961820 |
aatccttgtgtttcgaggccgttttaaaaaccaccttt-gttttgttgtctgtcagatgacgaggaatcaacgcagtgctttctttctggtctagtaatt |
42961918 |
T |
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| Q |
219 |
agaagtttgagtatcaggttcttttctcgtgctttgcaaatattttccgttcattga |
275 |
Q |
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|||||||||||||||||||| | ||||| |||| || ||||||||||| || ||||| |
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| T |
42961919 |
agaagtttgagtatcaggttttattctcatgctctggaaatattttccattgattga |
42961975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 283
Target Start/End: Complemental strand, 19331562 - 19331500
Alignment:
| Q |
221 |
aagtttgagtatcaggttcttttctcgtgctttgcaaatattttccgttcattgagctttact |
283 |
Q |
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||||||||| |||||||||| ||||| |||| |||||||||||||| ||||| ||||||||| |
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| T |
19331562 |
aagtttgagcatcaggttctattctcatgctgtgcaaatattttccattcatccagctttact |
19331500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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