View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5885_low_22 (Length: 327)

Name: NF5885_low_22
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5885_low_22
NF5885_low_22
[»] chr8 (3 HSPs)
chr8 (7-313)||(7950358-7950664)
chr8 (17-244)||(7941399-7941626)
chr8 (7-290)||(7946940-7947223)
[»] chr6 (4 HSPs)
chr6 (7-304)||(6785771-6786065)
chr6 (62-272)||(6802961-6803171)
chr6 (150-239)||(12837566-12837655)
chr6 (185-239)||(30635845-30635899)
[»] chr7 (4 HSPs)
chr7 (122-256)||(15129269-15129403)
chr7 (135-208)||(15107734-15107807)
chr7 (131-219)||(20460349-20460437)
chr7 (132-239)||(20472158-20472265)
[»] chr3 (6 HSPs)
chr3 (119-245)||(12110190-12110316)
chr3 (119-245)||(12123861-12123987)
chr3 (136-244)||(12128042-12128150)
chr3 (123-255)||(30157267-30157399)
chr3 (163-257)||(30056008-30056102)
chr3 (118-212)||(30079714-30079808)
[»] chr1 (1 HSPs)
chr1 (138-239)||(5951050-5951151)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 7950358 - 7950664
Alignment:
Q  7 gttcgggtgcttgttcaccatttgagatgccaccatgtcgttctagcgattgtcgttgcatccctgtttatctagttggaggttattgtacaaatccatc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||| ||||||||||||| |||||||    
T  7950358 gttcgggtgcttgttcaccatttgagatgccaccatgtcgttctagcgattgtcgttgcatccctattggactagttgcaggttattgtacatatccatc 7950457  T
Q  107 atctccaactgttatgaagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttat 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  7950458 atctccaactgttatgaagatggttgaggaacatcctaacttatgtcagtctcacgctgattgcacgaagaaggaaagtggaagcttttgtgcccgttat 7950557  T
Q  207 cctaatcctgatatcgaacatggatggtgtttttcctctaactttgaagcatacaaagtattcttcaatgtttcctctaaccctggactcataaaagatt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||    
T  7950558 cctaatcctgatatcgaacatggatggtgtttttcctctaactttgaagcatacgatgtattcttcaatgtttcctctaaccgtggactcataaaagatt 7950657  T
Q  307 tcttgcc 313  Q
    |||||||    
T  7950658 tcttgcc 7950664  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 7941399 - 7941626
Alignment:
Q  17 ttgttcaccatttgagatgccaccatgtcgttctagcgattgtcgttgcatccctgtttatctagttggaggttattgtacaaatccatcatctccaact 116  Q
    |||||| || ||||||||||||||||||| ||| |||   || |||||||| ||||||   ||| |||||||  | ||   | |||||||||||||||||    
T  7941399 ttgttcgccgtttgagatgccaccatgtccttcaagcagctgccgttgcattcctgttatactaattggaggaaactgcgtagatccatcatctccaact 7941498  T
Q  117 gttatgaagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctg 216  Q
     | | ||||||||||||| ||||| | ||||||||||| ||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  7941499 atcacgaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctg 7941598  T
Q  217 atatcgaacatggatggtgtttttcctc 244  Q
    |||||||| |||||||||||||||||||    
T  7941599 atatcgaatatggatggtgtttttcctc 7941626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 7946940 - 7947223
Alignment:
Q  7 gttcgggtgcttgttcaccatttgagatgccaccatgtcgttctagcgattgtcgttgcatccctgtttatctagttggaggttattgtacaaatccatc 106  Q
    ||||||||  |||||| |||||| |||||||||||||||  || ||| | ||||||||||| ||  ||   |||| ||||||  | ||   | |||||||    
T  7946940 gttcgggtatttgttcgccatttcagatgccaccatgtccctcaagcaactgtcgttgcattccacttgtactagctggaggaaactgcgtagatccatc 7947039  T
Q  107 atctccaactgttatgaagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttat 206  Q
    |||||||||| | | ||||||||||||| ||||| | ||||||||||| ||||| ||||||||||||||||| | |||||| ||||||||||||||||||    
T  7947040 atctccaactatcacgaagatggttgagaaacatgctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttat 7947139  T
Q  207 cctaatcctgatatcgaacatggatggtgtttttcctctaactttgaagcatacaaagtattcttcaatgtttcctctaaccct 290  Q
    ||||||||||||||| || ||||||||||||||||||| ||   | ||||| |  |||||||||||||  ||||||||||||||    
T  7947140 cctaatcctgatatcaaatatggatggtgtttttcctcaaatagtaaagcacaagaagtattcttcaagatttcctctaaccct 7947223  T

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Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 6786065 - 6785771
Alignment:
Q  7 gttcgggtgcttgttcaccatttgagatgccaccatgtcgttctagcgattgtcgttgcatccctgtttatctagttggaggttattgtacaaatccatc 106  Q
    ||||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||   ||| |||||||||  || | |||||||      
T  6786065 gttcgggtatttgttcgccatttgagatgccaccatgtcgctctagcgattgtcgttgcatccctattgcgctaattggaggtttctgcataaatccaat 6785966  T
Q  107 atctccaactgttatgaagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttat 206  Q
    |||   | || ||||||||||||| ||||||||||| || ||||| |||||||| | |||||| || |||||| |||||||||| |||||||||||||||    
T  6785965 atc---atctattatgaagatggtcgaggaacatcctaatttatgccagtctcatgttgattgtacaaagaagaaaagtgggagtttttgtgctcgttat 6785869  T
Q  207 cctaatcctgatatcgaacatggatggtgtttttcctctaactttgaagcatacaaagtattcttcaatgtttcctctaaccctggactcataaaaga 304  Q
    ||||||||| |||||||| ||||||||| |||| ||||||||| |||||||    | |||||||||||  ||||||||||| ||| ||| | ||||||    
T  6785868 cctaatcctaatatcgaatatggatggtattttgcctctaactctgaagcacgagacgtattcttcaacatttcctctaactctgaacttacaaaaga 6785771  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 62 - 272
Target Start/End: Complemental strand, 6803171 - 6802961
Alignment:
Q  62 ttgcatccctgtttatctagttggaggttattgtacaaatccatcatctccaactgttatgaagatggttgaggaacatccaaacttatgtcagtctcac 161  Q
    |||||||||| ||| | |||||| |||||| ||  |  || ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||     
T  6803171 ttgcatccctctttttttagttgtaggttactgctcgcatgcatcatccccaactgttatgaagatggttgaggaacatcctaacttatgtcagtctcat 6803072  T
Q  162 gctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgatatcgaacatggatggtgtttttcctctaactttgaagcataca 261  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||||||||||| |||||||||| |||||||||||||| ||||||||| | ||||| |      
T  6803071 gctgattgcacgaagaaaggaagtgggagtttttgcgctcgttatcctaatcttgatatcgaatatggatggtgttttgcctctaactctaaagcacaag 6802972  T
Q  262 aagtattcttc 272  Q
    |||||||||||    
T  6802971 aagtattcttc 6802961  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 12837655 - 12837566
Alignment:
Q  150 tgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgatatcgaacatggatggtgtttt 239  Q
    ||||||||||| | ||| ||||  ||||||| ||||||||||||||| ||||||| ||||||| |||||| | || |||| |||||||||    
T  12837655 tgtcagtctcatgatgaatgcaacaagaagggaagtgggagcttttgcgctcgttctcctaattctgataacaaaaatggctggtgtttt 12837566  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 30635899 - 30635845
Alignment:
Q  185 tgggagcttttgtgctcgttatcctaatcctgatatcgaacatggatggtgtttt 239  Q
    |||||||||||| ||||||||| |||||  ||||| ||||||||| |||||||||    
T  30635899 tgggagcttttgcgctcgttattctaattttgataacgaacatggttggtgtttt 30635845  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 256
Target Start/End: Complemental strand, 15129403 - 15129269
Alignment:
Q  122 gaagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgatatc 221  Q
    ||||||||| || |||||||| ||||||||||| || |||   |||||||  ||||||| || |||||| || |||||||||||||||||| ||||||||    
T  15129403 gaagatggtcgaagaacatcccaacttatgtcaatcccacatagattgcatcaagaagggaaatgggagtttctgtgctcgttatcctaattctgatatc 15129304  T
Q  222 gaacatggatggtgtttttcctctaactttgaagc 256  Q
    |||||||| ||||||||| |||||||| |||||||    
T  15129303 gaacatggctggtgttttacctctaacgttgaagc 15129269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 15107807 - 15107734
Alignment:
Q  135 gaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcc 208  Q
    ||||| |||||| ||||||| ||||| |  || ||||| || |||| |||||||||||| ||||||||||||||    
T  15107807 gaacacccaaacctatgtcaatctcatgtcgaatgcaccaaaaagggaagtgggagcttctgtgctcgttatcc 15107734  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 20460349 - 20460437
Alignment:
Q  131 tgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgata 219  Q
    |||||||||||| |||||||||  ||| || | ||| |||||| |||||| || ||| ||||| || |||||||||| | |||||||||    
T  20460349 tgaggaacatcctaacttatgtaggtcacatgttgaatgcacggagaagggaattggaagcttctgcgctcgttatcttgatcctgata 20460437  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 20472158 - 20472265
Alignment:
Q  132 gaggaacatccaaacttatgtcagtctcacgctgattgcac-gaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgatatcgaacatgga 230  Q
    |||||||||| ||| || |||||||||||  | |||||||| |||  |||||  ||||| ||||||||| |||||||||||| ||||||  ||| ||||     
T  20472158 gaggaacatcaaaaattttgtcagtctcatacagattgcacagaaagaggaat-tgggaccttttgtgcgcgttatcctaattctgataatgaatatggc 20472256  T
Q  231 tggtgtttt 239  Q
    |||||||||    
T  20472257 tggtgtttt 20472265  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 12110190 - 12110316
Alignment:
Q  119 tatgaagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgat 218  Q
    |||||||||| | ||||||||||| |||||||||||  |||| || || ||||  ||||||| |||||||| |||||||||||||||| ||||| |||||    
T  12110190 tatgaagatgatcgaggaacatcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtgggaacttttgtgctcgttatgctaatgctgat 12110289  T
Q  219 atcgaacatggatggtgtttttcctct 245  Q
     ||||| |||| ||||||||| |||||    
T  12110290 gtcgaatatgggtggtgttttgcctct 12110316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 12123861 - 12123987
Alignment:
Q  119 tatgaagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgat 218  Q
    |||||||||| | ||||||||||| |||||||| ||  |||| ||||| |||   ||||||| |||||| | ||||||||| |||||| ||||| |||||    
T  12123861 tatgaagatgatcgaggaacatcctaacttatgccaaactcatgctgaatgcttcaagaagggaagtggaaacttttgtgcccgttatgctaatgctgat 12123960  T
Q  219 atcgaacatggatggtgtttttcctct 245  Q
    |||||| |||||||||||||| |||||    
T  12123961 atcgaatatggatggtgttttgcctct 12123987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 12128042 - 12128150
Alignment:
Q  136 aacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgatatcgaacatggatggtg 235  Q
    ||||||| |||||||||||  |||| || || ||||  ||||||| |||||| | |||||||||||||||| |||||  |||||||||| ||||||||||    
T  12128042 aacatcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtggaaacttttgtgctcgttatgctaatgatgatatcgaatatggatggtg 12128141  T
Q  236 tttttcctc 244  Q
    |||| ||||    
T  12128142 ttttgcctc 12128150  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 30157399 - 30157267
Alignment:
Q  123 aagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgatatcg 222  Q
    |||| |||||||||||| || |||||||||  |||||| | ||| ||||| || ||||  |||||||  | ||||||||| | ||||||| ||||||||     
T  30157399 aagaaggttgaggaacaacctaacttatgttggtctcatgatgaatgcacaaaaaagggtagtgggaattattgtgctcgctttcctaattctgatatca 30157300  T
Q  223 aacatggatggtgtttttcctctaactttgaag 255  Q
    || |||| ||||||||| |||||| || |||||    
T  30157299 aatatggctggtgttttgcctctatctctgaag 30157267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 30056102 - 30056008
Alignment:
Q  163 ctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgatatcgaacatggatggtgtttttcctctaactttgaagca 257  Q
    |||| ||||| |||||||  |||||||  ||||||||||||| | ||||| |||||||| || |||| ||||||||| |||||| || |||||||    
T  30056102 ctgaatgcacaaagaagggtagtgggaatttttgtgctcgttttgctaattctgatatcaaatatggctggtgttttgcctctatctctgaagca 30056008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 30079808 - 30079714
Alignment:
Q  118 ttatgaagatggttgaggaacatccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaat 212  Q
    |||| |||| |||||| |||||||| |||||||| ||  ||||| |||| ||||| ||||| |  |||||||  ||||||||||||| |||||||    
T  30079808 ttataaagaaggttgaagaacatcctaacttatgccaaactcacactgaatgcacaaagaaaggtagtgggaatttttgtgctcgttttcctaat 30079714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 5951151 - 5951050
Alignment:
Q  138 catccaaacttatgtcagtctcacgctgattgcacgaagaaggaaagtgggagcttttgtgctcgttatcctaatcctgatatcgaacatggatggtgtt 237  Q
    ||||| ||| ||||||| ||||| | ||| |||| ||| |||| |||||||||||||||||||| || ||||| || |||| | ||  |||| |||||||    
T  5951151 catcctaacatatgtcactctcatgttgaatgcatgaacaagggaagtgggagcttttgtgctcattctcctattcttgatgttgattatggttggtgtt 5951052  T
Q  238 tt 239  Q
    ||    
T  5951051 tt 5951050  T

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