View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_23 (Length: 294)
Name: NF5885_low_23
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 23 - 279
Target Start/End: Complemental strand, 40522732 - 40522476
Alignment:
| Q |
23 |
cctaacccataaaaaaccatgaacaacacttccaatatatctgacaacccttcagagaactcaaatgtattggtatattattttattggtttttcatttt |
122 |
Q |
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| T |
40522732 |
cctaacccataaaaaaccatgaacaacacttccaatatatctgacaacccttcagagaactcaaatgaattagtatattattttattggtttttcatttt |
40522633 |
T |
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| Q |
123 |
ccattaccctcatgatgatgttcatgtctctattttcatgttattggcaaaacaggctgcaatctagtggcatcaattctaacacagatcatactactga |
222 |
Q |
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| T |
40522632 |
ccattaccctcatgatgatgttcatgtctctattttcatgttattggcaaaacaggatgcaatctagtggcatcaattctaacacagatcatactactga |
40522533 |
T |
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| Q |
223 |
agtgaatattgaagtatgtgaagaagaaagagacgttaatccgaacagttaccccat |
279 |
Q |
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| T |
40522532 |
agtgaatattgaagtatgtgaagaagaaagagacgttaatccgaacagttaccccat |
40522476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 40526638 - 40526479
Alignment:
| Q |
35 |
aaaaccatgaacaacacttccaatatatctgacaacccttcagagaactcaaatgtattggtatattattttattggtttttcattttccattaccctca |
134 |
Q |
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| T |
40526638 |
aaaaccatgaacaacacttccattaattctgaaaatccttcagagaactcaaatgcattagcatattattatatcggattgtcattagcctttattctcc |
40526539 |
T |
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| Q |
135 |
tgatgatgttcatgtctctattttcatgttattggcaaaacaggctgcaatctagtggca |
194 |
Q |
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| T |
40526538 |
tgatgatgttcatgtctctattttcatgttaccggcaaaacagactgctatctagaggca |
40526479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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