View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_24 (Length: 285)
Name: NF5885_low_24
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 33453569 - 33453312
Alignment:
| Q |
13 |
aatatgcatgtacatgagtgtgtatttaatttcatatatagaagctgtccgaacatatttaatagagtttttaaagactctaaaaccgatctatttaaat |
112 |
Q |
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| T |
33453569 |
aatatgtatgtacatgagtgtgtatttaatttcatacatagaagctgtccggacatatttaatagagtttttaaagactctaaaaccgatctatttaaat |
33453470 |
T |
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| Q |
113 |
aaataggatttatgaaaagttttagcctaacctttatactaaatgagttaaaccaatctaaactttaagtatgtccctatagatcctcttgaccaatatg |
212 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| || ||| |||||| | |||||||||||||||||||||| |
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| T |
33453469 |
aaataggatttatgaaaacttttagcctaatctttatactaaacgagttaaaccaatctaagctctaaatatgtcaccatagatcctcttgaccaatatg |
33453370 |
T |
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| Q |
213 |
acctattaaagagtttagaggtggaatatgaaagtatggtgattcgagatcatattga |
270 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
33453369 |
acctattaaagagtttagaggtggaatatgaaagtacggtgattccagatcatattga |
33453312 |
T |
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