View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5885_low_27 (Length: 251)

Name: NF5885_low_27
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5885_low_27
NF5885_low_27
[»] chr3 (28 HSPs)
chr3 (7-251)||(21490198-21490442)
chr3 (12-139)||(23631385-23631511)
chr3 (49-127)||(31787229-31787307)
chr3 (7-125)||(21271980-21272097)
chr3 (7-141)||(37166607-37166740)
chr3 (179-251)||(28451820-28451892)
chr3 (174-251)||(50699819-50699896)
chr3 (195-251)||(36923610-36923666)
chr3 (179-251)||(43310342-43310414)
chr3 (49-128)||(1779021-1779100)
chr3 (196-251)||(28945838-28945893)
chr3 (179-244)||(972411-972476)
chr3 (49-89)||(5030160-5030200)
chr3 (7-141)||(9281261-9281394)
chr3 (49-97)||(28228889-28228937)
chr3 (49-141)||(54684464-54684556)
chr3 (196-251)||(13863694-13863749)
chr3 (196-251)||(50360659-50360714)
chr3 (7-118)||(36594239-36594350)
chr3 (50-135)||(21894200-21894285)
chr3 (202-251)||(37238869-37238918)
chr3 (87-141)||(5505088-5505142)
chr3 (185-251)||(7681645-7681711)
chr3 (179-248)||(12568714-12568783)
chr3 (179-248)||(13545178-13545247)
chr3 (197-246)||(42709932-42709981)
chr3 (13-41)||(15568034-15568062)
chr3 (13-41)||(15664044-15664072)
[»] chr8 (23 HSPs)
chr8 (12-141)||(13888430-13888558)
chr8 (13-141)||(16345311-16345438)
chr8 (12-118)||(1156402-1156506)
chr8 (7-141)||(9615651-9615784)
chr8 (7-127)||(25118914-25119033)
chr8 (179-251)||(37456117-37456189)
chr8 (54-141)||(11988889-11988976)
chr8 (49-126)||(29359518-29359596)
chr8 (202-250)||(7107535-7107583)
chr8 (202-251)||(8072542-8072591)
chr8 (179-251)||(11257855-11257927)
chr8 (50-141)||(44887515-44887606)
chr8 (67-141)||(44947192-44947266)
chr8 (202-251)||(30069805-30069854)
chr8 (202-251)||(41128149-41128198)
chr8 (7-41)||(9632284-9632318)
chr8 (7-41)||(40204821-40204855)
chr8 (202-251)||(17867465-17867514)
chr8 (7-40)||(18020998-18021031)
chr8 (12-41)||(29360680-29360709)
chr8 (181-226)||(40395556-40395601)
chr8 (179-247)||(8770982-8771050)
chr8 (49-141)||(29616126-29616218)
[»] chr7 (27 HSPs)
chr7 (13-141)||(27248648-27248775)
chr7 (50-143)||(4088645-4088740)
chr7 (7-125)||(26190185-26190302)
chr7 (7-91)||(47080745-47080828)
chr7 (7-141)||(23734298-23734429)
chr7 (179-251)||(38652734-38652806)
chr7 (196-251)||(39854193-39854248)
chr7 (174-236)||(8073652-8073714)
chr7 (7-82)||(7312960-7313034)
chr7 (52-109)||(38445222-38445279)
chr7 (199-251)||(6727147-6727199)
chr7 (196-248)||(17874712-17874764)
chr7 (179-251)||(20884562-20884634)
chr7 (50-141)||(7460471-7460562)
chr7 (204-251)||(33955915-33955962)
chr7 (203-248)||(21148414-21148459)
chr7 (61-141)||(42493811-42493891)
chr7 (177-251)||(6647512-6647586)
chr7 (67-141)||(26651051-26651125)
chr7 (7-41)||(27045507-27045541)
chr7 (179-248)||(40211838-40211907)
chr7 (12-41)||(49110569-49110598)
chr7 (13-41)||(5529146-5529174)
chr7 (85-141)||(10464320-10464376)
chr7 (13-41)||(33376909-33376937)
chr7 (13-41)||(35570148-35570176)
chr7 (179-251)||(38073675-38073747)
[»] chr1 (18 HSPs)
chr1 (7-141)||(27462866-27463000)
chr1 (12-131)||(43452833-43452951)
chr1 (50-144)||(31651705-31651799)
chr1 (179-249)||(3491517-3491587)
chr1 (185-251)||(21276643-21276709)
chr1 (55-104)||(3910784-3910833)
chr1 (206-251)||(8550395-8550440)
chr1 (179-251)||(298199-298271)
chr1 (203-251)||(4051701-4051749)
chr1 (203-251)||(5198817-5198865)
chr1 (174-231)||(50746011-50746068)
chr1 (178-234)||(7648792-7648848)
chr1 (199-251)||(47588491-47588543)
chr1 (204-251)||(42596925-42596972)
chr1 (7-41)||(45265280-45265314)
chr1 (12-141)||(51924779-51924905)
chr1 (50-91)||(42728799-42728840)
chr1 (206-251)||(48022740-48022785)
[»] chr4 (28 HSPs)
chr4 (12-141)||(36662501-36662629)
chr4 (7-143)||(18881158-18881292)
chr4 (7-135)||(1348588-1348717)
chr4 (7-108)||(6829309-6829408)
chr4 (53-126)||(48336505-48336578)
chr4 (49-141)||(53987579-53987670)
chr4 (179-251)||(10109219-10109291)
chr4 (49-141)||(27982717-27982809)
chr4 (7-131)||(19533831-19533956)
chr4 (202-251)||(26533193-26533242)
chr4 (15-141)||(37164152-37164278)
chr4 (15-145)||(17492803-17492932)
chr4 (179-251)||(22409432-22409504)
chr4 (15-141)||(29821186-29821311)
chr4 (204-251)||(24010291-24010338)
chr4 (49-135)||(38715729-38715815)
chr4 (196-251)||(20574962-20575017)
chr4 (204-251)||(30538029-30538076)
chr4 (6-41)||(39260479-39260514)
chr4 (7-41)||(7614744-7614778)
chr4 (12-41)||(4455427-4455456)
chr4 (73-126)||(4859966-4860019)
chr4 (12-41)||(22197896-22197925)
chr4 (7-40)||(52227151-52227184)
chr4 (174-251)||(53039484-53039561)
chr4 (203-251)||(11873094-11873142)
chr4 (203-251)||(18995270-18995318)
chr4 (203-251)||(32318539-32318587)
[»] chr2 (21 HSPs)
chr2 (50-126)||(2544006-2544082)
chr2 (7-129)||(25766572-25766693)
chr2 (7-128)||(25762322-25762442)
chr2 (7-135)||(15770890-15771017)
chr2 (7-123)||(33046055-33046170)
chr2 (15-86)||(8924596-8924666)
chr2 (12-135)||(44022401-44022523)
chr2 (49-141)||(11383847-11383939)
chr2 (85-141)||(25786562-25786618)
chr2 (196-251)||(32227452-32227507)
chr2 (179-242)||(43305462-43305525)
chr2 (204-251)||(45075678-45075725)
chr2 (7-41)||(22839026-22839060)
chr2 (202-251)||(10500331-10500380)
chr2 (12-41)||(31903982-31904011)
chr2 (206-251)||(33830323-33830368)
chr2 (12-41)||(38292086-38292115)
chr2 (12-41)||(40555834-40555863)
chr2 (13-41)||(9006882-9006910)
chr2 (179-251)||(32656244-32656316)
chr2 (13-41)||(44563097-44563125)
[»] chr6 (9 HSPs)
chr6 (5-126)||(16120696-16120816)
chr6 (178-251)||(17506418-17506491)
chr6 (50-141)||(2555413-2555504)
chr6 (196-246)||(32785873-32785923)
chr6 (192-251)||(34396215-34396274)
chr6 (196-251)||(31767800-31767855)
chr6 (12-41)||(31869870-31869899)
chr6 (105-141)||(2141793-2141829)
chr6 (13-41)||(18877245-18877273)
[»] scaffold0373 (1 HSPs)
scaffold0373 (7-108)||(7012-7111)
[»] scaffold0154 (1 HSPs)
scaffold0154 (165-251)||(36435-36521)
[»] chr5 (19 HSPs)
chr5 (13-141)||(5985073-5985200)
chr5 (50-134)||(4701277-4701361)
chr5 (49-141)||(21213818-21213910)
chr5 (7-141)||(1918633-1918766)
chr5 (15-136)||(36578722-36578841)
chr5 (179-234)||(32135807-32135862)
chr5 (50-141)||(32300570-32300661)
chr5 (12-81)||(18479925-18479993)
chr5 (203-251)||(25836936-25836984)
chr5 (72-131)||(966080-966139)
chr5 (7-41)||(1831479-1831513)
chr5 (7-41)||(6996109-6996143)
chr5 (7-41)||(12359920-12359954)
chr5 (7-41)||(40316946-40316980)
chr5 (7-41)||(41410561-41410595)
chr5 (12-41)||(24916345-24916374)
chr5 (12-41)||(32017343-32017372)
chr5 (174-226)||(13789884-13789936)
chr5 (105-141)||(19344502-19344538)
[»] scaffold0204 (1 HSPs)
scaffold0204 (53-126)||(24027-24100)
[»] scaffold0102 (1 HSPs)
scaffold0102 (203-251)||(21257-21305)
[»] scaffold0283 (1 HSPs)
scaffold0283 (67-141)||(3170-3244)
[»] scaffold0085 (1 HSPs)
scaffold0085 (61-140)||(43626-43705)
[»] scaffold0464 (1 HSPs)
scaffold0464 (197-247)||(6695-6745)
[»] scaffold0034 (1 HSPs)
scaffold0034 (49-141)||(25040-25132)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 21490198 - 21490442
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21490198 tcgatgaatattttcaaaatatcaaatttttataatttttttctaatagattagtaaagttatttaagatcaaaattgtgcatttgtatgtatgacaagg 21490297  T
Q  107 tcaactgtgtcatttaatatgagacggagggagtagttacgtaccactccaatctcaaatataattaaagaaaaatgctaacttctgttcttagagcaca 206  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| |||||||||||    
T  21490298 tcaactgtgtcatttaatatgagacagagggagtagttacgtaccactccaatctcaaatataattaaagaaaaatattaacttgtgtccttagagcaca 21490397  T
Q  207 tgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21490398 tgttaagaattccactaatataaattatatattggaaattgtgtt 21490442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 23631511 - 23631385
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaac 111  Q
    ||||||||| ||||||||||||||||||||        |||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  23631511 gaatatttttaaaatatcaaatttttataatttttta-taatagataagtaaagttatttaagatcaaaattgtgtattgatatgtgtgacaaggtcaac 23631413  T
Q  112 tgtgtcatttaatatgagacggagggag 139  Q
    ||||||| |||||||| | |||||||||    
T  23631412 tgtgtcacttaatatggggcggagggag 23631385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 31787229 - 31787307
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatg 127  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||| | |||||||||||||||||||    
T  31787229 ctaatagattagtaaagttatttaagatcaaaattgtgcatcgatatatgtgacaagattaactgtgtcatttaatatg 31787307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 21271980 - 21272097
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||      
T  21271980 tcgatgaatattttcaaaatatcaaatttttataattttttt-taatagattagtaaaattatttaagatcaaaattgttcattggtatgtgtgataaat 21272078  T
Q  107 tcaactgtgtcatttaata 125  Q
    |||| ||||||| ||||||    
T  21272079 tcaattgtgtcacttaata 21272097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 37166607 - 37166740
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||| ||||||||||||||||||||       |||| |||||| ||||||||||||||||||||||| | ||||| ||||| | ||||||    
T  37166607 tcgatgaatatttttaaaatatcaaatttttataatttttt-ctaagagattaataaagttatttaagatcaaaattattcattgatatgtgtaacaagg 37166705  T
Q  107 tcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||||| |||||| |||||||| ||| || ||||||    
T  37166706 tcaaccgtgtcacttaatatgggactgatggagta 37166740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 28451892 - 28451820
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| ||  ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28451892 aaatgttaacttgtgcccttagggcacatgttaagaattccactaataaaaattatatattggaaattgtgtt 28451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 50699896 - 50699819
Alignment:
Q  174 aagaaaaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||| ||| || ||  ||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  50699896 aagaaaaatgttaatttatgcccttagggcacatgttaagaattccactaatagaaatcatgtattggaaattgtgtt 50699819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 36923666 - 36923610
Alignment:
Q  195 tcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  36923666 tcttagggcacatattaagaattccactaatagaaattatgtattggaaattgtgtt 36923610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 43310342 - 43310414
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||| ||   |||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||    
T  43310342 aaatgctaacttgtgcctttagagcacatgttaagaattctactaatagaaattttgtattggaaattgtgtt 43310414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 1779021 - 1779100
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatga 128  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||| || | |  ||||||| | |||||||||||||    
T  1779021 ctaatagattagtgaagttatttaagatcaaaattgtgtattagtatgcataatagagtcaactatatcatttaatatga 1779100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 28945838 - 28945893
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  28945838 cttagggcacatgttaagaattccactaataaaaatcatgtattggaaattgtgtt 28945893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 972411 - 972476
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaa 244  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||||| ||||||  |||||||||    
T  972411 aaatgttaacttgtgtccttagggcacatgttaagaattccactaataaaaattaggtattggaaa 972476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 5030160 - 5030200
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcat 89  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  5030160 ctaagagattagtaaagttatttaagatcaaaattgtgcat 5030200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 9281394 - 9281261
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||| ||||       ||||||||||| ||||| |||||||| |||||||| |||||||  ||   ||||||      
T  9281394 tcgatgaatattttcaaaatatcaaattttcataatttttt-ctaatagattattaaagatatttaagttcaaaattatgcattgacatacgtgacaaaa 9281296  T
Q  107 tcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||||||  ||||| ||| ||| |||||||||||||    
T  9281295 tcaactaggtcatataacatgggacggagggagta 9281261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 28228937 - 28228889
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgt 97  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  28228937 ctaatagaatagtaaagttatttaagatcaaagttgtgcattgatatgt 28228889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 54684556 - 54684464
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||| |||||| |||| ||||| |||||||||||||| ||||||||||| | |||||||| || || ||| |||||||| ||| || ||||||    
T  54684556 ctaagagattaataaaattattaaagatcaaaattgttcattggtatgtgtaacaaggtccaccgtatcacttaatatgggactgatggagta 54684464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 13863749 - 13863694
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||||||||||||||||||||||  |||| | ||||||||||||||||    
T  13863749 cttagggcacatgttaagaattccactaatagtaattgtgtattggaaattgtgtt 13863694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 50360659 - 50360714
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||| |||| |||||    
T  50360659 cttagggcacatattaagaattctactaatataaattatatattgaaaatggtgtt 50360714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 36594350 - 36594239
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||| ||||       |||||| |||| | ||| |||||||| |||||||| |||||||  |||  | | ||||    
T  36594350 tcgatgaatattttcaaaatatcaaattttcataatttttttctaatatattattcaagatatttaagctcaaaattatgcattgacatgcgtaataagg 36594251  T
Q  107 tcaactgtgtca 118  Q
    ||||||||||||    
T  36594250 tcaactgtgtca 36594239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 21894285 - 21894200
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggag 135  Q
    |||||||||| ||||| ||||||||||||||||||| ||||| ||||| || ||  ||||||||| ||   |||||||||| ||||    
T  21894285 taatagattattaaagatatttaagatcaaaattgtacattgatatgtgtggcagagtcaactgtatcgaataatatgagaaggag 21894200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 37238918 - 37238869
Alignment:
Q  202 gcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||||||| ||||| ||||||| | ||||||||||||||    
T  37238918 gcacatgttaagaattccattaatagaaattattttttggaaattgtgtt 37238869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 5505088 - 5505142
Alignment:
Q  87 cattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||||||||||| ||||   ||||||||| ||||||||||||||||||| ||||||    
T  5505088 cattggtatgtgtgacggagtcaactgtatcatttaatatgagacggatggagta 5505142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 7681711 - 7681645
Alignment:
Q  185 taacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||| || |||||||||| |||||| |||||| |||||||  |||| | ||||||||||||||||    
T  7681711 taacttgtgctcttagagcatatgttatgaattctactaatagtaattgtgtattggaaattgtgtt 7681645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 12568783 - 12568714
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgt 248  Q
    ||||| |||||| ||  ||||| |||||||||||||||| || ||||| ||||||| ||||| |||||||    
T  12568783 aaatgttaacttgtgcccttagggcacatgttaagaatttcattaataaaaattatttattgtaaattgt 12568714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 13545247 - 13545178
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgt 248  Q
    ||||| |||||| ||  ||||| |||||||||||||||| || ||||| ||||||| ||||| |||||||    
T  13545247 aaatgttaacttgtgcccttagggcacatgttaagaatttcattaataaaaattatttattgtaaattgt 13545178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 42709981 - 42709932
Alignment:
Q  197 ttagagcacatgttaagaattccactaatataaattatatattggaaatt 246  Q
    ||||||||||| |||| ||||||||||||| ||||||| ||| |||||||    
T  42709981 ttagagcacatattaaaaattccactaataaaaattatgtatcggaaatt 42709932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 15568062 - 15568034
Alignment:
Q  13 aatattttcaaaatatcaaatttttataa 41  Q
    |||||||||||||||||||||||||||||    
T  15568062 aatattttcaaaatatcaaatttttataa 15568034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 15664072 - 15664044
Alignment:
Q  13 aatattttcaaaatatcaaatttttataa 41  Q
    |||||||||||||||||||||||||||||    
T  15664072 aatattttcaaaatatcaaatttttataa 15664044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 13888558 - 13888430
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaac 111  Q
    ||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||    
T  13888558 gaatattttcaaaatatcaaattattataatttttt-ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtgtgacgagatcaac 13888460  T
Q  112 tgtgtcatttaatatgagacggagggagta 141  Q
     |||||| || ||||| |||||||||||||    
T  13888459 cgtgtcactttatatgggacggagggagta 13888430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 16345311 - 16345438
Alignment:
Q  13 aatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaact 112  Q
    ||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  16345311 aatattttcaaaatatcaaatttttata-gttttttctaatagattagtaaaattatttaagatcaaaattgtgcattgatatgtgtgacaaggtcaact 16345409  T
Q  113 gtgtcatttaatatgagacggagggagta 141  Q
     ||||| |||||||| ||| |||| ||||    
T  16345410 atgtcacttaatatgggacagaggaagta 16345438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 1156506 - 1156402
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaac 111  Q
    ||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||||||    
T  1156506 gaatattttcaaaatatcaaatttt-ataatttttt-ctaatagattagtaaagttatttaagatcaaaattgtacattggtgtgtgtgacaaagtcaac 1156409  T
Q  112 tgtgtca 118  Q
    || ||||    
T  1156408 tgagtca 1156402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 9615651 - 9615784
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| |||||||||||||||||||||| |||| ||       |||||| ||||||||||||||||||| |||||||| |  |||||||||| |||||| |    
T  9615651 tcgatgaatattttcaaaatatcaaatctttacaatttttt-ctaatatattagtaaagttatttaaggtcaaaattatagattggtatgtgtgacaatg 9615749  T
Q  107 tcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||||| | |||||||| |||||||| ||||    
T  9615750 tcaactgtgtaacttaatatgggacggaggaagta 9615784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 25118914 - 25119033
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||||||||       |||| | ||| |||||||||||||| ||||||||||||||||| ||||  | ||||||    
T  25118914 tcgatgaatattttcaaaatatcaaatttttataatttttt-ctaaaaaatttgtaaagttatttaatatcaaaattgtgcattgatatgggttacaagg 25119012  T
Q  107 tcaactgtgtcatttaatatg 127  Q
    |||| ||| ||| ||||||||    
T  25119013 tcaaatgtttcacttaatatg 25119033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 37456189 - 37456117
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||| ||  ||||| |||| |||||||||||||||||||| ||||||| ||||||||||||||||    
T  37456189 aaatgctaacttgtgcccttagggcacgtgttaagaattccactaatagaaattatgtattggaaattgtgtt 37456117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 11988889 - 11988976
Alignment:
Q  54 agattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||||| |||||||||||||| |||| ||||||| ||||  |||||||||||| |||| || |||||||||||| ||| |||||    
T  11988889 agattagtaatgttatttaagatcataattatgcattgatatgcgtgacaaggtcaattgtgccacttaatatgagacagagtgagta 11988976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 29359596 - 29359518
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtc-aactgtgtcatttaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||| | |||||| ||| |||||| ||| |||||||    
T  29359596 ctaatagattagtaaagttatttaagatcaaaattgtgcattaatatatgtgacaaagtcaaactgtatcacttaatat 29359518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 7107583 - 7107535
Alignment:
Q  202 gcacatgttaagaattccactaatataaattatatattggaaattgtgt 250  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  7107583 gcacatgttaagaattccactaatagaaattatgtattggaaattgtgt 7107535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 8072591 - 8072542
Alignment:
Q  202 gcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  8072591 gcacatgttaagaattccactaatagaaattatgtattgaaaattgtgtt 8072542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 11257855 - 11257927
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| ||  ||||| ||||||||||||||||||||||||| ||||||| ||||  ||||||||||    
T  11257855 aaatgttaacttgtgcccttagggcacatgttaagaattccactaatagaaattatgtattataaattgtgtt 11257927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 44887606 - 44887515
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||||| |||| | ||| |||||| | |||||||| ||||||||||||  | | | |||||||||||||||||| |||| |||||||||||||    
T  44887606 taatatattattcaagatatttatgctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggacggagggagta 44887515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 44947192 - 44947266
Alignment:
Q  67 tatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||| |||||||| ||||||||||||  | | | ||||||||||||||| || |||| |||||||||||||    
T  44947192 tatttaagctcaaaattatgcattggtatgcgtaatatggtcaactgtgtcatgtattatgggacggagggagta 44947266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 30069854 - 30069805
Alignment:
Q  202 gcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||||||||||||  |||| | ||||||||||||||||    
T  30069854 gcacatgttaagaattccactaatagtaattgtgtattggaaattgtgtt 30069805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 41128149 - 41128198
Alignment:
Q  202 gcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||| ||||    
T  41128149 gcacatattaagaattccactaatataaattatgtattgaaaattatgtt 41128198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 9632284 - 9632318
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  9632284 tcgatgaatattttcaaaatatcaaatttttataa 9632318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 40204855 - 40204821
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  40204855 tcgatgaatattttcaaaatatcaaatttttataa 40204821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 17867465 - 17867514
Alignment:
Q  202 gcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||| || ||||| ||||||| ||| ||||||||||||    
T  17867465 gcacatgttaagaatttcattaatagaaattatgtatcggaaattgtgtt 17867514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 18020998 - 18021031
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttata 40  Q
    |||| |||||||||||||||||||||||||||||    
T  18020998 tcgatgaatattttcaaaatatcaaatttttata 18021031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 29360709 - 29360680
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  29360709 gaatattttcaaaatatcaaatttttataa 29360680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 40395556 - 40395601
Alignment:
Q  181 atgctaacttctgttcttagagcacatgttaagaattccactaata 226  Q
    ||||||||||  |||||||| ||||||||||||||||||| |||||    
T  40395556 atgctaacttaggttcttagggcacatgttaagaattccattaata 40395601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 8770982 - 8771050
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattg 247  Q
    |||||||||||| | ||||||| ||||||||| |||||| |  ||||| ||||||||| ||||| ||||    
T  8770982 aaatgctaacttgtattcttagggcacatgtttagaatttctttaatagaaattatatgttggatattg 8771050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 29616218 - 29616126
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||| |||| | ||| |||||||| |||||||| ||||| ||||||  | | | | ||||||||||||| || |||| |||||||||||||    
T  29616218 ctaatatattattcaagatatttaagctcaaaattatgcatcggtatgcgtaataggatcaactgtgtcatgtattatgggacggagggagta 29616126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 27248775 - 27248648
Alignment:
Q  13 aatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaact 112  Q
    |||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  27248775 aatattttcaaaatatcaaatttttataatttttt-ctaatagattagttaagttatttaagatcaaaattgtgcattagtatatgtgacaaggtcaact 27248677  T
Q  113 gtgtcatttaatatgagacggagggagta 141  Q
    || ||| |||||||| |||| || |||||    
T  27248676 gtatcacttaatatgggacgaagtgagta 27248648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 4088740 - 4088645
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattg--gtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagtagt 143  Q
    ||||||||||||||||||||| ||||||| ||||||||||||  |||||| ||| |||||||||| |||||||||| ||| |||||||||||||||    
T  4088740 taatagattagtaaagttattgaagatcataattgtgcattggtgtatgtgtgagaaggtcaactatgtcatttaacatgggacggagggagtagt 4088645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 26190302 - 26190185
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| |||||||||||||| || |||||||||||        |||| |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26190302 tcgatgaatattttcaaaaaataaaatttttatattttttttctaagagatcagtaaagttatttaagatcaaaatt-tgcattggtatgtgtgacaagg 26190204  T
Q  107 tcaactgtgtcatttaata 125  Q
    |||| ||||||| ||||||    
T  26190203 tcaattgtgtcacttaata 26190185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 47080745 - 47080828
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattg 91  Q
    |||| ||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||||    
T  47080745 tcgatgaatatttttaaaatatcaaatttttataatttttt-ctaatagattagtaaagttatttaagatcaaaattatgcattg 47080828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 23734298 - 23734429
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||| ||||||||||||||||||||       |||| |||||| |||| ||||| ||||||||||||||||||| |||  |||||||| |    
T  23734298 tcgatgaatatttttaaaatatcaaatttttataatttttt-ctaagagattaataaaattattcaagatcaaaattgtgcattagtacatatgacaatg 23734396  T
Q  107 tcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||| || ||||| ||||||   |||||||||||||    
T  23734397 tcagctatgtcacttaata--cgacggagggagta 23734429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 38652806 - 38652734
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| || | |||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  38652806 aaatgttaacttgtgcttttagggcacatgttaagaattccactaatagaaattatgtattggaaagtgtgtt 38652734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 39854248 - 39854193
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  39854248 cttagggcacatgttaagaattctactaatataaattatgtattgaaaattgtgtt 39854193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 8073714 - 8073652
Alignment:
Q  174 aagaaaaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatat 236  Q
    |||| |||||||||||| ||||||||| | |||||||||||||| |||||||| |||||||||    
T  8073714 aagagaaatgctaacttgtgttcttagggtacatgttaagaatttcactaatagaaattatat 8073652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 7313034 - 7312960
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaat 82  Q
    |||| ||||||||||||||||||||||||||||||       |||||| |||| ||||||||||||||||||||||    
T  7313034 tcgatgaatattttcaaaatatcaaatttttataa-ttttttctaataaattaataaagttatttaagatcaaaat 7312960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 38445222 - 38445279
Alignment:
Q  52 atagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtca 109  Q
    |||||||  |||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  38445222 atagatttataaaattatttaagatcaaaattgtgcattggtatgtgtgacaatgtca 38445279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 6727147 - 6727199
Alignment:
Q  199 agagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  6727147 agagcacaagttaagaattccactaataaaaattatgtattgaaaattgtgtt 6727199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 17874764 - 17874712
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaattgt 248  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||| |||||||    
T  17874764 cttagggcacatattaagaattccactaatataaattatgtattgaaaattgt 17874712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 20884634 - 20884562
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| ||  ||||| || ||||||||||||||||||||||  |||| ||||||||||||||||||    
T  20884634 aaatgttaacttgtgcgcttagggctcatgttaagaattccactaatagtaattgtatattggaaattgtgtt 20884562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 7460562 - 7460471
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||||||||||||| | |||||||||||| ||||| | |||| |||||| |||||| ||||| ||  ||| ||||||| ||||||| ||||||    
T  7460562 taatagattagtataattatttaagatcgaaattttacattagtatgtgtgacaatgtcaattgaatcacttaatataagacggatggagta 7460471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 33955915 - 33955962
Alignment:
Q  204 acatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  33955915 acatgttaagaattctactaataaaaattatatattgaaaattgtgtt 33955962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 21148414 - 21148459
Alignment:
Q  203 cacatgttaagaattccactaatataaattatatattggaaattgt 248  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||    
T  21148414 cacatgttaagaattccactaataaaaattatgtattgaaaattgt 21148459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 42493811 - 42493891
Alignment:
Q  61 taaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||||| |||| ||||| |||| | | ||||| ||||| |||||  |||||||||||||||||||||| ||| |||||||||    
T  42493811 taaagatattaaagataaaaaatatacattgatatgtgtgacagagtcaactgtgtcatttaatatgggacagagggagta 42493891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 6647512 - 6647586
Alignment:
Q  177 aaaaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||| |||||| ||| ||||  ||| |||||||||||| |||||||| ||||||| ||| | ||||||||||    
T  6647512 aaaaatgttaacttgtgtccttatggcatatgttaagaatttcactaataaaaattatgtatagaaaattgtgtt 6647586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 26651125 - 26651051
Alignment:
Q  67 tatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||| |||||||| ||  ||||||||  | | | |||||||||||||||||| |||| |||||||||||||    
T  26651125 tatttaagctcaaaattatgttttggtatgcgtaatagggtcaactgtgtcatttattatgggacggagggagta 26651051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 27045541 - 27045507
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  27045541 tcgatgaatattttcaaaatatcaaatttttataa 27045507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 40211907 - 40211838
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgt 248  Q
    ||||| |||||| | | ||||||||| ||||||| ||||| |||| ||||||| || |||||||||||||    
T  40211907 aaatgttaacttgtatccttagagcatatgttaaaaattctactattataaatcatgtattggaaattgt 40211838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 49110598 - 49110569
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  49110598 gaatattttcaaaatatcaaatttttataa 49110569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 5529146 - 5529174
Alignment:
Q  13 aatattttcaaaatatcaaatttttataa 41  Q
    |||||||||||||||||||||||||||||    
T  5529146 aatattttcaaaatatcaaatttttataa 5529174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 10464320 - 10464376
Alignment:
Q  85 tgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||||| || || ||| ||||||| | |||||||||||| |||||||||||||    
T  10464320 tgcattggtacgtgtgtcaaagtcaactatatcatttaatatgggacggagggagta 10464376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 33376909 - 33376937
Alignment:
Q  13 aatattttcaaaatatcaaatttttataa 41  Q
    |||||||||||||||||||||||||||||    
T  33376909 aatattttcaaaatatcaaatttttataa 33376937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 35570176 - 35570148
Alignment:
Q  13 aatattttcaaaatatcaaatttttataa 41  Q
    |||||||||||||||||||||||||||||    
T  35570176 aatattttcaaaatatcaaatttttataa 35570148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 38073747 - 38073675
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| ||  ||||| |||||||||||| ||| | |||||| ||||||| |||| |||||||||||    
T  38073747 aaatgttaacttgtgcccttagggcacatgttaagcatttctctaatagaaattatgtattagaaattgtgtt 38073675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 27462866 - 27463000
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||||||||       ||| ||||||||||||||||||| ||||||||||||||||||| ||||||| || ||     
T  27462866 tcgatgaatattttcaaaatatcaaatttttataatttttttctagtagattagtaaagttatttgagatcaaaattgtgcattgatatgtataacgaga 27462965  T
Q  107 tcaactgtgtcatttaatatgagacggagggagta 141  Q
     ||| ||||||| |||||||| |||||| ||||||    
T  27462966 ccaattgtgtcacttaatatgggacggatggagta 27463000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 43452833 - 43452951
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaac 111  Q
    ||||||||| ||||||||||||||||||||       |||| |||||||| ||||||||||| || |||||| || |||||||||| |||||||||||||    
T  43452833 gaatatttttaaaatatcaaatttttataatttttt-ctaaaagattagtgaagttatttaaaattaaaattatgtattggtatgtgtgacaaggtcaac 43452931  T
Q  112 tgtgtcatttaatatgagac 131  Q
    ||||||| |||| |||||||    
T  43452932 tgtgtcacttaacatgagac 43452951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 31651799 - 31651705
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagtagtt 144  Q
    ||||| |||| | ||| |||||||| |||||||| ||||||||||||  | | | |||||||||||||||||| |||| ||||||||||||||||    
T  31651799 taatatattattcaagatatttaagctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggacggagggagtagtt 31651705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 3491587 - 3491517
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtg 249  Q
    ||||| |||||| ||  ||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  3491587 aaatgttaacttgtgcccttagggcaaatgttaagaattccactaatagaaattatgtattggaaattgtg 3491517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 21276709 - 21276643
Alignment:
Q  185 taacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||| ||| ||||| ||||||| ||||||||||||||||| ||||||| ||||| ||||||||||    
T  21276709 taacttgtgtccttagggcacatgataagaattccactaatagaaattatgtattgaaaattgtgtt 21276643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 3910833 - 3910784
Alignment:
Q  55 gattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaa 104  Q
    |||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  3910833 gattagtaaagttatttaagatcaaaatagtgcattagtatgtgtgacaa 3910784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 8550440 - 8550395
Alignment:
Q  206 atgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  8550440 atgttaagaattccactaatagaaattatgtattggaaattgtgtt 8550395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 298199 - 298271
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| ||  ||||| |||||||||||||||||||||||||  |||| | ||||||||||||||||    
T  298199 aaatgttaacttgtgcccttagggcacatgttaagaattccactaatagtaattgtgtattggaaattgtgtt 298271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 4051749 - 4051701
Alignment:
Q  203 cacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  4051749 cacatgttaagaattctactaatagaaattatatattgaaaattgtgtt 4051701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 5198817 - 5198865
Alignment:
Q  203 cacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  5198817 cacatgttaagaattctactaatagaaattatgtattggaaattgtgtt 5198865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 50746011 - 50746068
Alignment:
Q  174 aagaaaaatgctaacttctgttcttagagcacatgttaagaattccactaatataaat 231  Q
    |||||||||| |||||| ||| ||||  |||||||||||| |||||||||||||||||    
T  50746011 aagaaaaatgttaacttgtgtccttaaggcacatgttaaggattccactaatataaat 50746068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 7648848 - 7648792
Alignment:
Q  178 aaaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattat 234  Q
    |||||| |||||| || |||||||| | |||||||| ||||||||||||||||||||    
T  7648848 aaaatgttaacttgtgctcttagagtatatgttaaggattccactaatataaattat 7648792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 47588543 - 47588491
Alignment:
Q  199 agagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||||||| ||||||| ||| ||| ||||| ||||||||||    
T  47588543 agagcacatgttaagaattctactaatagaaactatgtattgaaaattgtgtt 47588491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 42596925 - 42596972
Alignment:
Q  204 acatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||||||||||| |||| |||||||| | ||||||||    
T  42596925 acatgttaagaattccactaatagaaatcatatattgaatattgtgtt 42596972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 45265280 - 45265314
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  45265280 tcgatgaatattttcaaaatatcaaatttttataa 45265314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 51924905 - 51924779
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaac 111  Q
    ||||||||||||||||| ||||||| ||||        |||||||| | ||||| |||| ||||| || ||   |||||||||||| ||| |  ||||||    
T  51924905 gaatattttcaaaatattaaattttcataatttttttgtaatagataattaaagatattaaagataaatat---gcattggtatgtgtgatagagtcaac 51924809  T
Q  112 tgtgtcatttaatatgagacggagggagta 141  Q
    ||||||  |||||||| |||||||||||||    
T  51924808 tgtgtcccttaatatgggacggagggagta 51924779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 42728799 - 42728840
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattg 91  Q
    |||||||||| ||||| ||||||||||||||||| |||||||    
T  42728799 taatagattattaaagatatttaagatcaaaattatgcattg 42728840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 48022740 - 48022785
Alignment:
Q  206 atgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||    
T  48022740 atgttaagaattcctgtaatagaaattatgtattggaaattgtgtt 48022785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 36662629 - 36662501
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaac 111  Q
    |||||| |||||||||||||||||||||||       |||| ||||||  ||||||||||||||| |||||||||||||||||||| |||||| ||| ||    
T  36662629 gaatatattcaaaatatcaaatttttataatttttt-ctaagagattaacaaagttatttaagattaaaattgtgcattggtatgtgtgacaatgtcgac 36662531  T
Q  112 tgtgtcatttaatatgagacggagggagta 141  Q
    |||||||||||||||  |||||| ||||||    
T  36662530 tgtgtcatttaatatatgacggaaggagta 36662501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 18881292 - 18881158
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||||||||  |||| ||||| |||||| |    
T  18881292 tcgatgaatattttcaaaatatcaaatttttataattttta--taataaattagtaaagttatttaagatcaaaattgtatattgttatgtgtgacaaag 18881195  T
Q  107 tcaactgtgtcatttaatatgagacggagggagtagt 143  Q
     ||||||||||  |||||||| |||||| ||| ||||    
T  18881194 acaactgtgtcgcttaatatgggacggaaggaatagt 18881158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 1348717 - 1348588
Alignment:
Q  7 tcgaagaatattttcaaaa-tatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaag 105  Q
    |||| |||||||||||||| ||||||||||||||||       |||||||||||||||| |||||||||||||||||| || ||||||| || |||||||    
T  1348717 tcgatgaatattttcaaaaatatcaaatttttataagttttttctaatagattagtaaaattatttaagatcaaaattttgtattggtacgtgtgacaag 1348618  T
Q  106 gtcaactgtgtcatttaatatgagacggag 135  Q
    ||| | |||| ||  ||||||| |||||||    
T  1348617 gtcgattgtgccacctaatatgggacggag 1348588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 6829408 - 6829309
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||| ||||       |||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  6829408 tcgatgaatattttcaaaatatcaaatttt-ataatttttt-ctaagagattagtaaagttatttaagatcaaaattgtgtattagtatgtgtgacaagg 6829311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 48336578 - 48336505
Alignment:
Q  53 tagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatat 126  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||  ||||| |||||||    
T  48336578 tagattagtaaagttatttaagataaaaactgtgcattggtatgtgtgacaagatcaaccatgtcacttaatat 48336505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 53987670 - 53987579
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||| |||||||||||||||||||| ||||||||||||| ||| | ||| |||||||||| ||||| ||||||||  ||||| ||||||    
T  53987670 ctaatagagtagtaaagttatttaagatc-aaattgtgcattgatatatgtgataaggtcaactatgtcacttaatatggaacggaaggagta 53987579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 10109219 - 10109291
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| ||| ||||| |||||| |||||||||||||||||| ||||||| ||||| ||||||||||    
T  10109219 aaatgttaacttgtgtccttagggcacatattaagaattccactaatagaaattatgtattgaaaattgtgtt 10109291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 27982717 - 27982809
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||||||||||||||||| ||||||||| ||||||||| |||| ||| |  ||||||| |||| ||| ||| ||||||||||||| || |||||    
T  27982717 ctaatagattagtaaagatatttaagaccaaaattgtacattagtacgcgtgacaagatcaattgtatcacttaatatgagacgaagagagta 27982809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 19533956 - 19533831
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagt--tatttaagatcaaaattgtgcattggtatgtatgacaa 104  Q
    |||| ||||||||| ||||||||||||||||||||        |||||||| | |||| |  |||||||||||||||||||| |||| ||||| ||||||    
T  19533956 tcgatgaatatttttaaaatatcaaatttttataattttctt-taatagatcattaaaatgatatttaagatcaaaattgtgtattgttatgtgtgacaa 19533858  T
Q  105 ggtcaactgtgtcatttaatatgagac 131  Q
     ||||||| | |||| |||||||||||    
T  19533857 agtcaactatatcatataatatgagac 19533831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 26533242 - 26533193
Alignment:
Q  202 gcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||||||    
T  26533242 gcacatgttaagaattccactaatagaaattatgtatcggaaattgtgtt 26533193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 37164152 - 37164278
Alignment:
Q  15 tattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgt 114  Q
    |||||||||||||||||||||| ||||       ||| || |||| | ||| |||||||| |||||||| ||||||||||||  | | | ||||||||||    
T  37164152 tattttcaaaatatcaaattttcataatttttttctattatattattcaagatatttaagctcaaaattatgcattggtatgcgtaatagggtcaactgt 37164251  T
Q  115 gtcatttaatatgagacggagggagta 141  Q
    ||||| || |||| |||||||| ||||    
T  37164252 gtcatgtattatgggacggaggaagta 37164278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 17492803 - 17492932
Alignment:
Q  15 tattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgt 114  Q
    |||||||||||||||||||||| ||||       |||||| |||| | ||| |||||||| ||||| || ||||||| ||||| | | ||||| ||||||    
T  17492803 tattttcaaaatatcaaattttcataatttttt-ctaatatattattcaagatatttaagctcaaagttatgcattgatatgtgtaataaggttaactgt 17492901  T
Q  115 gtcatttaatatgagacggagggagtagtta 145  Q
    ||||  || || |||||||||||||||||||    
T  17492902 gtcaagtattaagagacggagggagtagtta 17492932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 22409504 - 22409432
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| ||  ||||| ||||||||||||||||| ||||||| |||| || ||||||||||||||||    
T  22409504 aaatgttaacttgtgcccttagggcacatgttaagaattctactaatagaaatcatgtattggaaattgtgtt 22409432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 29821186 - 29821311
Alignment:
Q  15 tattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgt 114  Q
    |||||||||||||||||||||| ||||       |||||| |||| | ||| |||||||| |||||||| ||||||||||||  | | | ||||||||||    
T  29821186 tattttcaaaatatcaaattttcataatttttt-ctaatatattattcaagatatttaagctcaaaattatgcattggtatgcgtaatagggtcaactgt 29821284  T
Q  115 gtcatttaatatgagacggagggagta 141  Q
    ||||| || |||| ||||||| |||||    
T  29821285 gtcatgtattatgggacggagagagta 29821311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 24010338 - 24010291
Alignment:
Q  204 acatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  24010338 acatgttaagaattccactaatagaaattatgtattgaaaattgtgtt 24010291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 38715729 - 38715815
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggag 135  Q
    |||| ||||||||||| ||||||||||||||| || ||||||| |||||| | ||   |||||||| | | ||||||||||||||||    
T  38715729 ctaagagattagtaaaattatttaagatcaaatttatgcattgatatgtacggcagtatcaactgtattacttaatatgagacggag 38715815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 20575017 - 20574962
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| ||||||||||||||||||| |||||  |||| | ||||||||||||||||    
T  20575017 cttagggcacatgttaagaattccattaataataattgtgtattggaaattgtgtt 20574962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 30538076 - 30538029
Alignment:
Q  204 acatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||||| ||||| ||||||| ||||| ||||||||||    
T  30538076 acatgttaagaattccattaatagaaattatgtattgaaaattgtgtt 30538029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 39260479 - 39260514
Alignment:
Q  6 gtcgaagaatattttcaaaatatcaaatttttataa 41  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39260479 gtcgatgaatattttcaaaatatcaaatttttataa 39260514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 7614744 - 7614778
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  7614744 tcgatgaatattttcaaaatatcaaatttttataa 7614778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 4455427 - 4455456
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  4455427 gaatattttcaaaatatcaaatttttataa 4455456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 4860019 - 4859966
Alignment:
Q  73 agatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatat 126  Q
    |||||| ||||||||||| || ||| ||| |||||||||||||||| |||||||    
T  4860019 agatcataattgtgcattagtgtgtgtgataaggtcaactgtgtcacttaatat 4859966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 22197896 - 22197925
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  22197896 gaatattttcaaaatatcaaatttttataa 22197925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 52227151 - 52227184
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttata 40  Q
    |||| |||||||||||||||||||||||||||||    
T  52227151 tcgatgaatattttcaaaatatcaaatttttata 52227184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 53039561 - 53039484
Alignment:
Q  174 aagaaaaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||| ||||| |||||| || |||||  | |||||||||||||| |||||||| ||||||| |||||  |||||||||    
T  53039561 aagagaaatgttaacttgtgctcttaaggtacatgttaagaatttcactaatagaaattatgtattgataattgtgtt 53039484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 11873094 - 11873142
Alignment:
Q  203 cacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||| ||||||||| ||| | |||||||||| |||||||||||    
T  11873094 cacatgttaaaaattccactgatagagattatatattagaaattgtgtt 11873142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 18995318 - 18995270
Alignment:
Q  203 cacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||| ||||||| ||||||| ||| | ||||||||||    
T  18995318 cacatgttaagaattctactaatagaaattatgtatcgaaaattgtgtt 18995270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 32318539 - 32318587
Alignment:
Q  203 cacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||| || ||||| ||||||| ||||| ||||||||||    
T  32318539 cacatgttaagaatttcattaatagaaattatgtattgaaaattgtgtt 32318587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 2544006 - 2544082
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatat 126  Q
    ||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||    
T  2544006 taatagattggtaaagttatttaagatcaaaattatgcattgatatgtgtgacaaggtcaactgtgtcacttaatat 2544082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 25766572 - 25766693
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||||||||       |||| |||||| |||| |||||||| ||||||||||||||||| ||||| |||||| |    
T  25766572 tcgatgaatattttcaaaatatcaaatttttataatttttt-ctaaaagattaataaaattatttaatatcaaaattgtgcattgatatgtgtgacaatg 25766670  T
Q  107 tcaactgtgtcatttaatatgag 129  Q
    |||| ||||||| ||||||||||    
T  25766671 tcaattgtgtcacttaatatgag 25766693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 25762322 - 25762442
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||| ||||||||||||||||||||       |||| |||||| |||| |||||||| ||||||||||||||||| ||||| |||||| |    
T  25762322 tcgatgaatatttttaaaatatcaaatttttataatttttt-ctaaaagattaataaaattatttaatatcaaaattgtgcattgatatgtgtgacaatg 25762420  T
Q  107 tcaactgtgtcatttaatatga 128  Q
    |||||||||||| |||||||||    
T  25762421 tcaactgtgtcacttaatatga 25762442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 15771017 - 15770890
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||| ||||||||||||||||||||       || ||||||||||||||||||||||  |||||||| || |||||||||| | |||  |    
T  15771017 tcgatgaatatttttaaaatatcaaatttttataatttttt-cttatagattagtaaagttatttaaagtcaaaattatgtattggtatgtgtaacagag 15770919  T
Q  107 tcaactgtgtcatttaatatgagacggag 135  Q
    |||||||||||| |||||||| |||||||    
T  15770918 tcaactgtgtcacttaatatgggacggag 15770890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 33046170 - 33046055
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| |||| |||| ||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||| ||||||||||||| | | || |    
T  33046170 tcgatgaatttttttaaaatatcaaatttttataatttttt-ctaatagattagtaaagttatttaagatcgaaattatgcattggtatgtgttataaag 33046072  T
Q  107 tcaactgtgtcatttaa 123  Q
    |||||||||||| ||||    
T  33046071 tcaactgtgtcacttaa 33046055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 8924666 - 8924596
Alignment:
Q  15 tattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtg 86  Q
    |||||| ||||||||||||||||||||       ||||||||||| ||||| ||||||||||||||||||||    
T  8924666 tatttttaaaatatcaaatttttataatttttt-ctaatagattattaaagatatttaagatcaaaattgtg 8924596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 44022401 - 44022523
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaac 111  Q
    ||||||||||||||||||||||||||||||       |||||| |||| | ||  |||||||| |||||||| |||||||  |||  | | |||||||||    
T  44022401 gaatattttcaaaatatcaaatttttataa-ttttttctaatatattattcaatatatttaagttcaaaattatgcattgacatgcgtaataaggtcaac 44022499  T
Q  112 tgtgtcatttaatatgagacggag 135  Q
    |||||||| ||  |||||||||||    
T  44022500 tgtgtcatatatcatgagacggag 44022523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 11383939 - 11383847
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||| |||| | ||| |||||||  |||||||| ||| |||||||| || | ||||||||||||||||| || ||||||| |||| |||||    
T  11383939 ctaatatattattcaagatatttaaactcaaaattatgcgttggtatggataataaggtcaactgtgtcatgtattatgagaaggagagagta 11383847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 25786618 - 25786562
Alignment:
Q  85 tgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||||||||  ||||  ||||||||||||||||||||||||||| | ||||||    
T  25786618 tgcattggtatgtgggacagagtcaactgtgtcatttaatatgagacgaatggagta 25786562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 32227452 - 32227507
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| ||| ||||||||||||| ||||||| ||||||| ||||| ||||||||||    
T  32227452 cttagggcatatgttaagaattctactaatagaaattatgtattgaaaattgtgtt 32227507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 43305462 - 43305525
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattgga 242  Q
    ||||| |||||| ||| ||||| ||||||||||| ||||| ||||||| ||||||| |||||||    
T  43305462 aaatgataacttgtgtccttagggcacatgttaataattctactaatagaaattatgtattgga 43305525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 45075678 - 45075725
Alignment:
Q  204 acatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||| |||| |||||||||||||||| ||||| ||||||||||    
T  45075678 acatgttaaaaatttcactaatataaattatgtattgaaaattgtgtt 45075725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 22839060 - 22839026
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  22839060 tcgatgaatattttcaaaatatcaaatttttataa 22839026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 10500331 - 10500380
Alignment:
Q  202 gcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||| | ||||||||||| ||||||| ||| ||||||||||||    
T  10500331 gcacatgttaatatttccactaataaaaattatgtatcggaaattgtgtt 10500380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 31904011 - 31903982
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  31904011 gaatattttcaaaatatcaaatttttataa 31903982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 33830368 - 33830323
Alignment:
Q  206 atgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||  ||||||| ||||||| ||||||||||||||||    
T  33830368 atgttaagaattttactaatagaaattatgtattggaaattgtgtt 33830323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 38292086 - 38292115
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  38292086 gaatattttcaaaatatcaaatttttataa 38292115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 40555863 - 40555834
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  40555863 gaatattttcaaaatatcaaatttttataa 40555834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 9006910 - 9006882
Alignment:
Q  13 aatattttcaaaatatcaaatttttataa 41  Q
    |||||||||||||||||||||||||||||    
T  9006910 aatattttcaaaatatcaaatttttataa 9006882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 32656244 - 32656316
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||| |||||| ||  ||||| |||||||||||||||| |||||||| |||| || ||||| || |||||||    
T  32656244 aaatgttaacttgtgcccttagggcacatgttaagaatttcactaatagaaatcatgtattgaaacttgtgtt 32656316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 44563125 - 44563097
Alignment:
Q  13 aatattttcaaaatatcaaatttttataa 41  Q
    |||||||||||||||||||||||||||||    
T  44563125 aatattttcaaaatatcaaatttttataa 44563097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 16120816 - 16120696
Alignment:
Q  5 tgtcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaa 104  Q
    |||||| | ||||||| ||||||||||||||||||||       ||||||||||| ||||||||||||| |||||||||||| |||||||| | ||||||    
T  16120816 tgtcgatgcatatttttaaaatatcaaatttttataatttttt-ctaatagattattaaagttatttaatatcaaaattgtgtattggtatttgtgacaa 16120718  T
Q  105 ggtcaactgtgtcatttaatat 126  Q
     |||||| |||||| |||||||    
T  16120717 agtcaaccgtgtcacttaatat 16120696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 17506418 - 17506491
Alignment:
Q  178 aaaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||| || |||||||||| ||||||| ||||||||||||| ||||||| |||| |||||||||||    
T  17506418 aaaatgctaacttgtgctcttagagcatatgttaaaaattccactaatagaaattatgtatttgaaattgtgtt 17506491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 2555413 - 2555504
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||| ||||||||||||| ||||||||||| ||||||||| || || |||||| || |||| ||||| |||||||  |||||||| ||||    
T  2555413 taatagtttagtaaagttatgtaagatcaaaaatgtgcattgatacgtgtgacaaagttaactatgtcacttaatataggacggaggaagta 2555504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 32785923 - 32785873
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaatt 246  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||||||||    
T  32785923 cttagggcacatgttaagaattccactaatagaaattatgtattggaaatt 32785873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 34396274 - 34396215
Alignment:
Q  192 tgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||| ||||||||||| |||||| |||||| ||||||| ||||| ||||||||||    
T  34396274 tgttcttagggcacatgttaataattccgctaatagaaattatgtattgaaaattgtgtt 34396215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 31767800 - 31767855
Alignment:
Q  196 cttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||||||||||||  |||| |||||||  |||| ||||||||||    
T  31767800 cttagagcacatgttaagaattccataaatagaaattatgcattgaaaattgtgtt 31767855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 31869870 - 31869899
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  31869870 gaatattttcaaaatatcaaatttttataa 31869899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 2141793 - 2141829
Alignment:
Q  105 ggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||||||||||||| || |||||||||||||||    
T  2141793 ggtcaactgtgtcatttattaagagacggagggagta 2141829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 18877273 - 18877245
Alignment:
Q  13 aatattttcaaaatatcaaatttttataa 41  Q
    |||||||||||||||||||||||||||||    
T  18877273 aatattttcaaaatatcaaatttttataa 18877245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 7012 - 7111
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||| ||||       |||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  7012 tcgatgaatattttcaaaatatcaaatttt-ataatttttt-ctaagagattagtaaagttatttaagatcaaaattgtgtattagtatgtgtgacaagg 7109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 36521 - 36435
Alignment:
Q  165 atataattaaagaaaaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||| |||||  ||||| |||||| ||  |||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  36521 atataaataaagggaaatgttaacttgtgcccttaaagcacatgttaagaattccactaatagaaattatgtattggaaattgtgtt 36435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 5985073 - 5985200
Alignment:
Q  13 aatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaact 112  Q
    |||||||||||||||||||| ||||||||       ||||||||||||||||| |||||||  ||||||||||| |||||||||| |||||| | | ||     
T  5985073 aatattttcaaaatatcaaaattttataatttttt-ctaatagattagtaaagctatttaaattcaaaattgtgtattggtatgtgtgacaatgcctacc 5985171  T
Q  113 gtgtcatttaatatgagacggagggagta 141  Q
    || ||||| |||| | |||||||||||||    
T  5985172 gtatcattaaataagggacggagggagta 5985200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 4701277 - 4701361
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacgga 134  Q
    ||||||||||||||||||||||||||||||||||||||||   |||  |||| || |||||||| |||| |||||||| ||||||    
T  4701277 taatagattagtaaagttatttaagatcaaaattgtgcatctatatagatgataatgtcaactgcgtcacttaatatgggacgga 4701361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 21213818 - 21213910
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||| ||     |||||||||||||||||| ||  ||| |||||||||    
T  21213818 ctaataaattagtaaagttatttaagatcaaaattgtgcattgatatgtgtggtgcagtcaactgtgtcatttaacataggacagagggagta 21213910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 1918766 - 1918633
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaagg 106  Q
    |||| ||||||||||||||||||||||||| ||||       |||||| |||| | ||| |||||||| |||||||| |||||||| |||| | | ||||    
T  1918766 tcgatgaatattttcaaaatatcaaattttcataatttttt-ctaatatattattcaagatatttaaggtcaaaattatgcattggcatgtgtaataagg 1918668  T
Q  107 tcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||| || | || | ||||||||||||||||    
T  1918667 tcaactgtatcctgtattgtgagacggagggagta 1918633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 36578722 - 36578841
Alignment:
Q  15 tattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgt 114  Q
    |||||||||||||||||||||| ||||       ||||||||||| | ||| |||||||||| |||||||||||||| ||| |||||||  || ||||||    
T  36578722 tattttcaaaatatcaaattttcataatttttt-ctaatagattattcaagatatttaagatgaaaattgtgcattgatatatatgacagagttaactgt 36578820  T
Q  115 gtcatttaatatgagacggagg 136  Q
     ||| ||||||| |||||||||    
T  36578821 atcacttaatat-agacggagg 36578841  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 32135807 - 32135862
Alignment:
Q  179 aaatgctaacttctgttcttagagcacatgttaagaattccactaatataaattat 234  Q
    ||||| ||||||||| |||||| |||||||||||| |||||||||||| |||||||    
T  32135807 aaatgttaacttctgctcttagggcacatgttaaggattccactaatagaaattat 32135862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 32300661 - 32300570
Alignment:
Q  50 taatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||| | ||||| |||| ||||| |||| | ||||||| ||| | |||||  ||||||||||||||||||||||||| ||| ||||||    
T  32300661 taatagataattaaagatattaaagataaaaaatatgcattgatatttgtgacagagtcaactgtgtcatttaatatgagatggaaggagta 32300570  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 18479993 - 18479925
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataannnnnnnctaatagattagtaaagttatttaagatcaaaa 81  Q
    ||||||||||||||||||||||||||||||        ||| ||||||||||| ||||||||||||||||    
T  18479993 gaatattttcaaaatatcaaatttttataatttttta-taagagattagtaaaattatttaagatcaaaa 18479925  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 25836936 - 25836984
Alignment:
Q  203 cacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    ||||||||||||||||||||||||  |||||| ||||||||| ||||||    
T  25836936 cacatgttaagaattccactaataataattatgtattggaaagtgtgtt 25836984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 966080 - 966139
Alignment:
Q  72 aagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagac 131  Q
    ||||| |||| | |||||| |||| |||||||| ||||||||||||| ||||||||||||    
T  966080 aagataaaaaatatgcattagtatatatgacaaagtcaactgtgtcacttaatatgagac 966139  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 1831479 - 1831513
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  1831479 tcgatgaatattttcaaaatatcaaatttttataa 1831513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 6996109 - 6996143
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  6996109 tcgatgaatattttcaaaatatcaaatttttataa 6996143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 12359954 - 12359920
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  12359954 tcgatgaatattttcaaaatatcaaatttttataa 12359920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 40316946 - 40316980
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  40316946 tcgatgaatattttcaaaatatcaaatttttataa 40316980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 41410595 - 41410561
Alignment:
Q  7 tcgaagaatattttcaaaatatcaaatttttataa 41  Q
    |||| ||||||||||||||||||||||||||||||    
T  41410595 tcgatgaatattttcaaaatatcaaatttttataa 41410561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 24916374 - 24916345
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  24916374 gaatattttcaaaatatcaaatttttataa 24916345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 32017343 - 32017372
Alignment:
Q  12 gaatattttcaaaatatcaaatttttataa 41  Q
    ||||||||||||||||||||||||||||||    
T  32017343 gaatattttcaaaatatcaaatttttataa 32017372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 13789936 - 13789884
Alignment:
Q  174 aagaaaaatgctaacttctgttcttagagcacatgttaagaattccactaata 226  Q
    |||| ||||| |||||| ||| ||||| |||||||||||| ||||||||||||    
T  13789936 aagagaaatgttaacttgtgtccttagggcacatgttaaggattccactaata 13789884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 19344538 - 19344502
Alignment:
Q  105 ggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||||||||||||| || |||||||||||||||    
T  19344538 ggtcaactgtgtcatttattaagagacggagggagta 19344502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 24100 - 24027
Alignment:
Q  53 tagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatat 126  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||  ||||| |||||||    
T  24100 tagattagtaaagttatttaagataaaaactgtgcattggtatgtgtgacaagatcaaccatgtcacttaatat 24027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 21257 - 21305
Alignment:
Q  203 cacatgttaagaattccactaatataaattatatattggaaattgtgtt 251  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  21257 cacatgttaagaattccaataataaaaattatatattggaaattgtgtt 21305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 3170 - 3244
Alignment:
Q  67 tatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    |||||||| |||||||| ||||||||||||  | | | ||||||||||||||| || |||| |||||||||||||    
T  3170 tatttaagctcaaaattatgcattggtatgcgtaatatggtcaactgtgtcatgtattatgggacggagggagta 3244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 43705 - 43626
Alignment:
Q  61 taaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagt 140  Q
    ||||| |||||||||||||||||||||||||  | |||| | || ||||||||||||   ||||||  ||||||||||||    
T  43705 taaagatatttaagatcaaaattgtgcattgacacgtataaaaaagtcaactgtgtcgcataatataggacggagggagt 43626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 6695 - 6745
Alignment:
Q  197 ttagagcacatgttaagaattccactaatataaattatatattggaaattg 247  Q
    ||||||||||||||||| ||||||  |||| ||||||||| ||||||||||    
T  6695 ttagagcacatgttaaggattccataaatagaaattatatcttggaaattg 6745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 25132 - 25040
Alignment:
Q  49 ctaatagattagtaaagttatttaagatcaaaattgtgcattggtatgtatgacaaggtcaactgtgtcatttaatatgagacggagggagta 141  Q
    ||||||||||| || || ||||||||||||||||||| ||||  ||||  | || | ||| | |||||||  |||||||||||||| ||||||    
T  25132 ctaatagattattagagatatttaagatcaaaattgtacattaatatgcgtaaccaagtctattgtgtcacataatatgagacggatggagta 25040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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