View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_29 (Length: 242)
Name: NF5885_low_29
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_29 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 7489040 - 7488816
Alignment:
| Q |
18 |
ctccgccagccaggccgccacaccttgtctgtgggttgaaagcaacgcctcagcctgcaaaacctgcttcagcacgtagttccttcgtccctgtaggatc |
117 |
Q |
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| T |
7489040 |
ctccgccagccaggccgccacgccttgtctgtgggtggaaagcaacgcctcagcctgcaaaacctgcttcagcacgtagttccttcgtccctgtaggatc |
7488941 |
T |
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| Q |
118 |
ttctctaggtgtgtggtcactggtcattcttctatgttctaattcatgattctgattacatttctgcttattgattcttgcgctgtgagtttaatcttgt |
217 |
Q |
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| T |
7488940 |
ttctctaggtgtgtggtcactggtcattcttctatgttctaattcatgattctgattacatttttgcttattgattcttgcgctgtgagtttaatcttgt |
7488841 |
T |
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| Q |
218 |
tctgttcattgaatctgcgtatgtt |
242 |
Q |
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| T |
7488840 |
tctgttcattgaatctgcctatgtt |
7488816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 6943211 - 6943254
Alignment:
| Q |
56 |
aaagcaacgcctcagcctgcaaaacctgcttcagcacgtagttc |
99 |
Q |
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| T |
6943211 |
aaagcaacacctcagcctgcaaaacctgcttctgcacgttgttc |
6943254 |
T |
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