View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_33 (Length: 228)
Name: NF5885_low_33
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 40855373 - 40855162
Alignment:
| Q |
1 |
tatagatcccagagttcgtgtcaaattctcgccggtagaaggaaagaatctaaggtaagagtaattaccatacaactgaaaattatgcactggattaaaa |
100 |
Q |
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| T |
40855373 |
tatagatcccagagttcgtgtcaaattctcgccggtagaaggaaagcatctaaggtaagagtaattaccatacaactgaaaattatgcactggattaaaa |
40855274 |
T |
|
| Q |
101 |
gtctacaaagtatttgtattcttaaaagaaaaagatttattttgtggcgttggatttgtgtgaagaatgaactaataatataatacatactaaataaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40855273 |
gtctacaaagtatttgtattcttaaaagaaaaagatttattttgtggcgtaggatttgtgtgaagaatgaactaataatataatacatactaaataaatc |
40855174 |
T |
|
| Q |
201 |
agagtttaaaag |
212 |
Q |
| |
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| |||||||||| |
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| T |
40855173 |
aaagtttaaaag |
40855162 |
T |
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