View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_6 (Length: 604)
Name: NF5885_low_6
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_6 |
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| [»] scaffold0090 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Complemental strand, 23552362 - 23551785
Alignment:
| Q |
11 |
cacagatgttataatcatcacacctatcttgtggaaagttttggtaaacattccatgttttcgattcaggaatccaaatgagacgttgacgaagtaaaag |
110 |
Q |
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| T |
23552362 |
cacagatgttataatcatcacacctatcttgtggaaagttttggtaaacattccatgttttcgattcaggaatccaaatgagacgttgacgaagtaaaag |
23552263 |
T |
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| Q |
111 |
agtttgattcaaaacaagtatggtaatcacagaggtgttcttgagtgtgtatatataataaacttcgtcttcattgtttacgaattcgtaactataaact |
210 |
Q |
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| T |
23552262 |
agtttgattcaaaacaagtatggtaatcacagaggtgttcttgagtgtgtatatataataaacttcgtcttcattgtttacgaattcgtaactataaact |
23552163 |
T |
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| Q |
211 |
ggattctcttgcaatgcaaatacgttactaaatggtcctgttctaaagatctcaactgagtctttccaaataaacatttcaggaataatgctaagtctca |
310 |
Q |
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| T |
23552162 |
ggattctcttgcaatgcaaatacgttactaaatggtcctgttctgaaaatctcaactgaatctttccaaataaacatttctggaataatgctaagtctca |
23552063 |
T |
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| Q |
311 |
tacctgaagtaaaattacccgaagacgggtcttcccagtttttccatgcattgaaacccctatttataccacttttcttgtcccaaccaatcttcattcc |
410 |
Q |
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| T |
23552062 |
tacctgaagtaaaattacccgaagacgggtcttcccagtttttccatgcattgaaacccctatttataccacttttcttgtcccaaccaatcttcattcc |
23551963 |
T |
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| Q |
411 |
tgctaatattgtattatcaggataatcaaagctctgccacaagaaattctcttcatccctttcatctctaagtactaaatttccattatcgaggagttgc |
510 |
Q |
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| T |
23551962 |
tgctaatattgtattatcaggataatcaaagctttgccacaagaaattctcttcatccctttcatctttaagtactaaatttccattgtcgaggagttgc |
23551863 |
T |
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| Q |
511 |
gcgatgggaatggaagtcatcttagttgtatttgtcgaccatagaacagactgattgttgccgagaacaacaaggttt |
588 |
Q |
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| T |
23551862 |
gcgatgggaatggaagtcatcttagttgtatttgtcgaccatagaagagactgattgttgccgagaacaacaaggttt |
23551785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 9844 - 9921
Alignment:
| Q |
26 |
catcacacctatcttgtggaaagttttggtaaacattccatgttttcgattcaggaatccaaatgagacgttgacgaa |
103 |
Q |
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| T |
9844 |
catcacaactatcttgtggtaaagtttggtaaacattccatgttttggattctgaaatccaaatgaggcgtagacgaa |
9921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 10221 - 10290
Alignment:
| Q |
388 |
ttgtcccaaccaatcttcattcctgctaatattgtattatcaggataatcaaagctctgccacaagaaat |
457 |
Q |
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| T |
10221 |
ttgtcccatccagccttcattcctgataatattgtatcacaaggataatcaaaactttgccacaaaaaat |
10290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 22691733 - 22691794
Alignment:
| Q |
55 |
taaacattccatgttttcgattcaggaatccaaatgagacgttgacgaagtaaaagagtttg |
116 |
Q |
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| T |
22691733 |
taaacattccatgttctcgattcaggtatccaaaggaggcgttgacgaacagaaagagtttg |
22691794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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