View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_7 (Length: 515)
Name: NF5885_low_7
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 23 - 485
Target Start/End: Complemental strand, 13714020 - 13713546
Alignment:
| Q |
23 |
atttccatcattctttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggttt |
122 |
Q |
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| T |
13714020 |
atttccatcattctttcacatcaacagtggtacttgcaagccaagttttaggtgaagtaaacatttttatttatgcaagtgtattatagttatttggttt |
13713921 |
T |
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| Q |
123 |
ggtatgtatgcatacacaatttgtccaaactaaacaagcttg------------agaatccattaatctcaaaactaaaaacacatacaatatgaatctc |
210 |
Q |
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| T |
13713920 |
ggtatgtatgcatacacaatttgtccaaattaaacaagcttgcacacaggcttgagaatccattaatctcaaaactaaaaacacatacaatatgaatctc |
13713821 |
T |
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| Q |
211 |
tctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaa |
310 |
Q |
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| T |
13713820 |
tctgtatactataacatatatacagaatggccacatccatttatttaattcacattaaacaccacacttcttatctatcttaccttacttgtcatcaaaa |
13713721 |
T |
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| Q |
311 |
ctaccatggttgaagctcaatggcacttcaaaaggactaatattaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatgg |
410 |
Q |
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| T |
13713720 |
ctaccatggttgaagctcaatggcacttcaaaaggactaatatcaaaaggcctctgaccaatataattaccaggtggatcatagttacaactaataatgg |
13713621 |
T |
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| Q |
411 |
tgctacggccatcattacactttaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataat |
485 |
Q |
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| T |
13713620 |
tgctacgaccatcattacacttaaccttagcacatccaacccgaaccgaatcgcgccagacaacttgagtataat |
13713546 |
T |
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