View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5885_low_8 (Length: 510)
Name: NF5885_low_8
Description: NF5885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5885_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Original strand, 1791856 - 1792321
Alignment:
| Q |
16 |
attttcttgaaacagagaataaaaaagcttttgtatgaagagacactattgggaatacattgatttatgatttttataaaaattgtgcttattaaacaat |
115 |
Q |
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| T |
1791856 |
attttcttgaaacagagaataaaaaagcttttctatgaagggacactattgggaatacattgatttatgatttttataaaaattgtgcttattaaacaat |
1791955 |
T |
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| Q |
116 |
ttgatctcttcagatttaaaagatttgttgtcttttatataaaataaaaatatatcttttgtcattaactacattagcagaagcattgtcactcgtggat |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1791956 |
ttgatctcttcagatttaaaagatatgttgtcttttatataaaataaaaatatatcttttgtcattaactacattagcagaagcattgtcaatcgtggat |
1792055 |
T |
|
| Q |
216 |
cgtggaaaatagcgatttgtttaaattacacccatttcacaatattatgtactaatcgcaaaacaatagcgatttgttcaaattctgctttgacatagtg |
315 |
Q |
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| T |
1792056 |
cgtggaaaatagcgatttgtttaaattacacccatttcaaaatattatgtactaatcgcaaaacaatagcgatttgttcaaattctgctttgacatagtg |
1792155 |
T |
|
| Q |
316 |
ctgtaccgatgctgtagctgctaatgacaacattgatcagcagtctgattacccgtagttatttcaatatttgattcgtaggtttactggcattttaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792156 |
ctgtaccgatgctgtagctgctaatgacaacattgatcagcagtctgattacccgtagttatttcaatatttgattcgtaggtttactggcattttaaat |
1792255 |
T |
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| Q |
416 |
gtcgctgtattattgttgctattgatgtatcattagtgttccttatccccttaatattagtatatg |
481 |
Q |
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| T |
1792256 |
gtcgctgtattattgttgctattgatgtatcattagtgttccttatccccttaatattagtatatg |
1792321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 37538448 - 37538416
Alignment:
| Q |
272 |
cgcaaaacaatagcgatttgttcaaattctgct |
304 |
Q |
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| T |
37538448 |
cgcaaaacaatagcgatttgttcaaattctgct |
37538416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 299
Target Start/End: Complemental strand, 2732965 - 2732936
Alignment:
| Q |
270 |
atcgcaaaacaatagcgatttgttcaaatt |
299 |
Q |
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| T |
2732965 |
atcgcaaaacaatagcgatttgttcaaatt |
2732936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 33390657 - 33390686
Alignment:
| Q |
275 |
aaaacaatagcgatttgttcaaattctgct |
304 |
Q |
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| T |
33390657 |
aaaacaatagcgatttgttcaaattctgct |
33390686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 28804359 - 28804331
Alignment:
| Q |
276 |
aaacaatagcgatttgttcaaattctgct |
304 |
Q |
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| T |
28804359 |
aaacaatagcgatttgttcaaattctgct |
28804331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 33044004 - 33044032
Alignment:
| Q |
276 |
aaacaatagcgatttgttcaaattctgct |
304 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33044004 |
aaacaatagcgatttgttcaaattctgct |
33044032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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