View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5886-Insertion-2 (Length: 853)

Name: NF5886-Insertion-2
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5886-Insertion-2
NF5886-Insertion-2
[»] chr1 (2 HSPs)
chr1 (183-848)||(3808207-3808869)
chr1 (8-186)||(3807911-3808083)
[»] chr5 (1 HSPs)
chr5 (319-508)||(29838248-29838436)
[»] chr4 (2 HSPs)
chr4 (335-507)||(6903411-6903582)
chr4 (34-131)||(6901960-6902057)
[»] chr3 (9 HSPs)
chr3 (329-507)||(197105-197282)
chr3 (320-508)||(224853-225040)
chr3 (318-540)||(221917-222138)
chr3 (335-507)||(204911-205082)
chr3 (318-540)||(216972-217193)
chr3 (332-508)||(210383-210561)
chr3 (34-131)||(209710-209807)
chr3 (341-440)||(198274-198372)
chr3 (44-131)||(206293-206380)


Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 183 - 848
Target Start/End: Original strand, 3808207 - 3808869
Alignment:
Q  183 gaaagagagatcaattaaagtggcaacataaacatttactttaaaccaaaaattctaaagtataatcctcaccgtacgatttgccttagcaatttttaga 282  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  3808207 gaaagagagatcaatttaagtagcaacataaacatttactttaaaccaaaaactccaaagtataatcctcaccgtacgatttgccttagcaatttttaga 3808306  T
Q  283 agcatgtttaaacatgcttttgtcctctttcccatgactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatccca 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3808307 agcatgtttaaacatgcttttgtcctctttcccatgactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatccca 3808406  T
Q  383 acagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaac 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3808407 acagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaac 3808506  T
Q  483 tcttgccatttgttgcaaaagaaaacgccattaccccatcttttcagttccatttcccttttagatttgaagtttcctactccaaacgtgatttttagcc 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3808507 tcttgccatttgttgcaaaagaaaacgccattaccccatcttttcagttccatttcccttttagatttgaagtttcctactccaaacgtgatttttagcc 3808606  T
Q  583 acaaatttacagttgatttcacttttaagcgaatgaatcaaacataagtacacttcggattcaactacgtgtgtaccctgttaatcaccttagattca-- 680  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  3808607 acaaatttacagttgatttcacttttaagggaatgaatcaaacataagtacacttcggattcaactacgtgtgtaccctgttaatcaccttagattcaac 3808706  T
Q  681 --acatagggaattcaatcaaacataagcaatgtttaggc-aaacctccaaattttaagttcaattagaattaattatggagac-aaatcaattacactg 776  Q
      |||||||||||||||||||||||||||||||||||||| |||||| ||            |||||||||||||||||||||| ||||||||||||||     
T  3808707 atacatagggaattcaatcaaacataagcaatgtttaggcaaaaccttca------------aattagaattaattatggagacaaaatcaattacacta 3808794  T
Q  777 gagcacatttcc-aatatgtcaattaattatatacctct-aaatcaattttgtctcatgc-aaagtaaaaccaaa 848  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||    
T  3808795 gagcacatttccaaatatgtcaattaattatatacctctaaaatcaattttgtctcgtgcaaaagtaaaaccaaa 3808869  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 3807911 - 3808083
Alignment:
Q  8 attatcaagcttgaagacggtcttagtcaaacatataatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaacat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3807911 attatcaagcttgaagacggtcttagtcaaacatataatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaacat 3808010  T
Q  108 atagcatgcaacatcatgtctcatcatcatcaaagtagagaggatacatttgttaaacaagataatcaaccacacgaaa 186  Q
    ||||||||||||||||||||||||||||||||      |||  ||||||||||||||||||||||||||||||||||||    
T  3808011 atagcatgcaacatcatgtctcatcatcatca------agataatacatttgttaaacaagataatcaaccacacgaaa 3808083  T

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Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 319 - 508
Target Start/End: Original strand, 29838248 - 29838436
Alignment:
Q  319 actaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaacttt 418  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||| ||| |||||| ||||  ||||||||||| | ||||||||||||||||||||||||    
T  29838248 actaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgcatcaaatataataacactaaacttt 29838347  T
Q  419 ggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaac 508  Q
     ||||| |||||||| |||||||||| | | |||||||||||||| || || |||||||  |||||||||||||||||||||||||||||    
T  29838348 -gaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaataatattctacaaactcttgccatttgttgcaaaagaaaac 29838436  T

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Target: chr4 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 335 - 507
Target Start/End: Original strand, 6903411 - 6903582
Alignment:
Q  335 tttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataa 434  Q
    |||| ||||| ||||||||| ||||||||||  |||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||| ||     
T  6903411 tttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttacatcaaatataataacactaaacttt-gaatttccttcgtat 6903509  T
Q  435 ttgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaa 507  Q
    |||||||| ||||| ||||||||||||| ||| ||||||| |   ||||||||||||| |||| |||||||||    
T  6903510 ttgaaagataggtagcaaccatatcctaatgaatagtattttgcaaactcttgccattcgttgtaaaagaaaa 6903582  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 6902057 - 6901960
Alignment:
Q  34 tcaaacatataatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaacatatagcatgcaacatcatgtctcat 131  Q
    ||||||| | |||||| |||||| ||||||   || ||||| | |||| || ||||||||||||||||  |||| ||||||||||| ||||| |||||    
T  6902057 tcaaacacagaatacacaagtgcatattactaatttgtgcaatgcatggaaattatcaaataccaaaatcacatgtagcatgcaacgtcatgactcat 6901960  T

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Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 329 - 507
Target Start/End: Original strand, 197105 - 197282
Alignment:
Q  329 tttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttcct 428  Q
    |||||||||||||||| ||||  |||||||||||| || ||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  197105 tttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaacataagttacgtcaaatataataacactaaacttt-gaattccct 197203  T
Q  429 tcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaa 507  Q
    || || |||||||| ||||| |||||||| |||| ||| ||||||| |  |||||||| ||||| |||| |||||||||    
T  197204 tcgtatttgaaagataggtagcaaccataccctaatgaatagtattttgcgaactcttcccattcgttggaaaagaaaa 197282  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 320 - 508
Target Start/End: Original strand, 224853 - 225040
Alignment:
Q  320 ctaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttg 419  Q
    |||||| ||| |||||||| ||||| ||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||||||||||||     
T  224853 ctaggacactctgtgtttgtttctccattagtacttggagttttgagtggatagcaaatctcaacagaagttacatcaaatataataacactaaacttt- 224951  T
Q  420 gaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaac 508  Q
    ||||| |||||||| |||||||| | | | |||||||||| ||  || |||||||||   || | || |||||||||||||||| ||||    
T  224952 gaattcccttcatatttgaaagacatgaagcaaccatatcttaaagaatagtattctgcaaattgtttccatttgttgcaaaagtaaac 225040  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 318 - 540
Target Start/End: Original strand, 221917 - 222138
Alignment:
Q  318 gactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactt 417  Q
    ||||| || |||||||||||| ||||| |||| ||||| |||||||||| |||||||||||| ||||||||||||| |||||||||| |||| |||||||    
T  221917 gactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacagaagttacatcaaatataacaacattaaactt 222016  T
Q  418 tggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaacgccattacc 517  Q
    | ||||  |||||||| ||||||   | | |  ||||||| ||||| || |||||||||   |||| ||||||||||||||||||| ||||| | || ||    
T  222017 t-gaatccccttcatatttgaaacgcaagaaggaaccataccctatagaatagtattctgcaaactgttgccatttgttgcaaaagtaaacgtcgttgcc 222115  T
Q  518 ccatcttttcagttccatttccc 540  Q
     ||| | ||||||||||||||||    
T  222116 gcatttcttcagttccatttccc 222138  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 335 - 507
Target Start/End: Complemental strand, 205082 - 204911
Alignment:
Q  335 tttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataa 434  Q
    |||| ||||| ||||||||| ||||||||||  |||||||||||| |||| |||||||| |||||||||| ||||||||||||| ||||||||||| ||     
T  205082 tttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttacatcaaatataacaacactaaacttt-gaatttccttcgtat 204984  T
Q  435 ttgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaa 507  Q
    |||||||| ||||| |||||| ||||||  || ||||||| |   ||||||||||||| |||| |||||||||    
T  204983 ttgaaagataggtagcaaccacatcctaacgaatagtattttgcaaactcttgccattcgttgtaaaagaaaa 204911  T

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Target: chr3; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 318 - 540
Target Start/End: Original strand, 216972 - 217193
Alignment:
Q  318 gactaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactt 417  Q
    ||||| || ||||||| |||| ||||| ||| |||||| |||||||||| |||||||||||| ||| ||||||| | ||||||||||  |||||||||||    
T  216972 gactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatagaagttgcatcaaatataaagacactaaactt 217071  T
Q  418 tggaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaacgccattacc 517  Q
    | ||||  |||||||| |||||| | ||| |  ||||||| ||||| || |||||||||   |||| ||||||||||||||||||| ||||| |||| ||    
T  217072 t-gaatccccttcatatttgaaacacaggaaggaaccataccctatagaatagtattctgcaaactgttgccatttgttgcaaaagtaaacgtcattgcc 217170  T
Q  518 ccatcttttcagttccatttccc 540  Q
     ||| | ||||||| ||||||||    
T  217171 gcatttcttcagtttcatttccc 217193  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 332 - 508
Target Start/End: Original strand, 210383 - 210561
Alignment:
Q  332 gtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttca 431  Q
    ||||||| ||||| | |||||||||||||||| || |||||||||||  ||||||||||| | |||||||||||||| ||||| ||| ||||| |||||     
T  210383 gtgtttgtttctccactagtacttggagtttttaatggatagcaaatttcaacagaagttgcatcaaatataataacgctaaaattt-gaattcccttcg 210481  T
Q  432 taattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccat---ttgttgcaaaagaaaac 508  Q
    ||  ||||||| ||| | ||||| |||| ||  || |||||||||   |||| |||||||   |||||||||||| ||||    
T  210482 tatctgaaagacaggaagcaaccgtatcttaaagaatagtattctgcaaactgttgccattccttgttgcaaaagtaaac 210561  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 209710 - 209807
Alignment:
Q  34 tcaaacatataatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaacatatagcatgcaacatcatgtctcat 131  Q
    ||||||| | |||||| |||||| ||||||   || ||||| | |||| || ||||||||||||||||| |||| ||||||||||| ||||| |||||    
T  209710 tcaaacacagaatacacaagtgcatattactaatttgtgcaatgcatggaaattatcaaataccaaaaccacatgtagcatgcaacgtcatgactcat 209807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 440
Target Start/End: Original strand, 198274 - 198372
Alignment:
Q  341 tctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttggaatttccttcataattgaaa 440  Q
    |||| ||||||||||||||||||||| | |||  ||||| |||||||||||   ||| |||||| |||| |||||||| ||||| |||| ||| ||||||    
T  198274 tctccattagtacttggagttttgaatgaataagaaatctcaacagaagttgtatcatatataacaacattaaacttt-gaattcccttgatagttgaaa 198372  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 206293 - 206380
Alignment:
Q  44 aatacataagtgcctattaccggttagtgcattccatgtaagttatcaaataccaaaacaacatatagcatgcaacatcatgtctcat 131  Q
    |||||| |||||| ||||||   || ||||| | |||| || ||||||||||||||||| |||| ||||||||||| ||||| |||||    
T  206293 aatacacaagtgcatattactaatttgtgcaatgcatggaaattatcaaataccaaaaccacatgtagcatgcaacgtcatgactcat 206380  T

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