View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5886-Insertion-4 (Length: 498)

Name: NF5886-Insertion-4
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5886-Insertion-4
NF5886-Insertion-4
[»] chr6 (1 HSPs)
chr6 (106-498)||(7206155-7206555)
[»] scaffold0094 (6 HSPs)
scaffold0094 (185-346)||(10257-10413)
scaffold0094 (185-346)||(9467-9623)
scaffold0094 (74-177)||(10519-10622)
scaffold0094 (72-177)||(9256-9361)
scaffold0094 (380-436)||(9892-9948)
scaffold0094 (20-71)||(10941-10992)
[»] chr7 (7 HSPs)
chr7 (185-346)||(17214766-17214922)
chr7 (185-346)||(17215577-17215733)
chr7 (77-185)||(17215831-17215939)
chr7 (72-173)||(17214557-17214658)
chr7 (20-71)||(17214263-17214314)
chr7 (380-425)||(17215191-17215236)
chr7 (380-418)||(17215270-17215308)
[»] chr8 (3 HSPs)
chr8 (385-498)||(31243186-31243299)
chr8 (184-346)||(31242761-31242912)
chr8 (72-185)||(31242563-31242676)


Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 106 - 498
Target Start/End: Original strand, 7206155 - 7206555
Alignment:
Q  106 gaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccattttgttcaccattacgaccatcaaactctgggtgggaaggtataaat 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  7206155 gaaatccggattttgaatctcttcttgaagaaaacataaatcagccttgccattttgttcaccaatacgaccatcaaactctggatgggaaggtataaat 7206254  T
Q  206 tcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacaggctatctacaatggaaaaatc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  7206255 tcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttg-----acataacatgtccacccaacaggctatctacaatggaaaaatc 7206349  T
Q  306 aattctttctaagacaataggttcgcgttgtatataatcat------------ttgatcttcttatgttactcaggtcaccttcaattcctgtaaaagac 393  Q
    ||||||||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  7206350 aattctttctaagacaataggttcgtgttgtatataatcattctcataagtagttgatcttcttatgttactcaggtcaccttcaattcctgtaaaagac 7206449  T
Q  394 -taaggattgggaagtggagtagtatttggtaaggaagaaccagcatttgtttcactactagttgactgatccctggcttggctgtcatagattcctgca 492  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7206450 ttaaggattgggaagtggagtagtatttggtaaggaagaaccagcatttgtttcactactagttgactgatccctggcttggctgtcatagattcctgca 7206549  T
Q  493 gcgaca 498  Q
    ||||||    
T  7206550 gcgaca 7206555  T

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Target: scaffold0094 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 185 - 346
Target Start/End: Complemental strand, 10413 - 10257
Alignment:
Q  185 tctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacag 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |      |||||||||||||||||||||    
T  10413 tctgggtgggaaggtataaattcttgtagggcaggttgatcttgcactaattgggtcgataaattagtattcg-----gcataacatgtccacccaacag 10319  T
Q  285 gctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat 346  Q
     ||||| ||| |||| ||||||||||||||||| |||||||||||| | |||||||||||||    
T  10318 actatcaacattggacaaatcaattctttctaacacaataggttcgtgatgtatataatcat 10257  T

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Target: scaffold0094; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 185 - 346
Target Start/End: Original strand, 9467 - 9623
Alignment:
Q  185 tctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacag 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |      |||||||||||||||||||||    
T  9467 tctgggtgggaaggtataaattcttgtagggcaggttgatcttgcacaaattgggtcgataaattagtattcg-----gcataacatgtccacccaacag 9561  T
Q  285 gctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat 346  Q
     ||||| ||| |||| ||||||||||||||||| |||||||||||| | |||||||||||||    
T  9562 actatcaacattggacaaatcaattctttctaacacaataggttcgtgatgtatataatcat 9623  T

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Target: scaffold0094; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 10622 - 10519
Alignment:
Q  74 tgcaatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccattttgttcaccattac 173  Q
    |||||| ||| |||||||||||| ||| |||||||  ||| ||||||||||||||||  |||||||| |||||||||||||||||||| |||||||||||    
T  10622 tgcaatatctaaggttgtgaagacaaacaaaggaatcctgaattttgaatctcttctctaagaaaacttaaatcagccttgccattttcttcaccattac 10523  T
Q  174 gacc 177  Q
    ||||    
T  10522 gacc 10519  T

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Target: scaffold0094; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 9256 - 9361
Alignment:
Q  72 cctgcaatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccattttgttcaccatt 171  Q
    |||||||||||| ||| |||||| | ||| |||||||  || |||||||||||||||||   ||||||| |||||||||||||||||||| |||||||||    
T  9256 cctgcaatgtcttaggctgtgaaaagaaacaaaggaatcctagattttgaatctcttctctgagaaaacttaaatcagccttgccattttcttcaccatt 9355  T
Q  172 acgacc 177  Q
    ||||||    
T  9356 acgacc 9361  T

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Target: scaffold0094; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 436
Target Start/End: Original strand, 9892 - 9948
Alignment:
Q  380 ttcctgtaaaagactaaggattgggaagtggagtagtatttggtaaggaagaaccag 436  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  9892 ttcctgtaaaagatcaaggattgggaagtggagtagtatttggtaacgaagaaccag 9948  T

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Target: scaffold0094; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 10992 - 10941
Alignment:
Q  20 gattcttgctgactatgatgaggtagaagaccttgttgagaagacaatggtt 71  Q
    |||| ||||||| || |||||||||||||| ||||||| |||||||||||||    
T  10992 gatttttgctgattaagatgaggtagaagatcttgttgggaagacaatggtt 10941  T

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Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 185 - 346
Target Start/End: Original strand, 17214766 - 17214922
Alignment:
Q  185 tctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacag 284  Q
    ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||      |||||||||||||||||| ||    
T  17214766 tctgggtgggaaggtataaattcttgtagggcaagttgatctagcactaattgggtcgataaattagcatttg-----gcataacatgtccacccaagag 17214860  T
Q  285 gctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat 346  Q
    |||||| ||| |||| ||||||||||||| |||||||||| ||||||| |||||||||||||    
T  17214861 gctatcaacattggacaaatcaattctttgtaagacaatatgttcgcgatgtatataatcat 17214922  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 185 - 346
Target Start/End: Complemental strand, 17215733 - 17215577
Alignment:
Q  185 tctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaacag 284  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||      ||||||||||||||||||||     
T  17215733 tctgggtggaaaggtataaattcttgcagcgcaagttgatcttgcactaattggttcgataaattagcatttg-----gcataacatgtccacccaacat 17215639  T
Q  285 gctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat 346  Q
    |||||| ||| |||| |||||||||||||||| ||||||||||||||| |||||||||||||    
T  17215638 gctatcaacattggacaaatcaattctttctaggacaataggttcgcgatgtatataatcat 17215577  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 17215939 - 17215831
Alignment:
Q  77 aatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccattttgttcaccattacgac 176  Q
    |||||||||||||||||||||||| |||||||  || |||||||||||||||||   ||||||| |||||||||||||||||||| ||||||||||||||    
T  17215939 aatgtctcaggttgtgaagataaataaaggaatcctagattttgaatctcttctctgagaaaacttaaatcagccttgccattttcttcaccattacgac 17215840  T
Q  177 catcaaact 185  Q
    || ||||||    
T  17215839 caccaaact 17215831  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 17214557 - 17214658
Alignment:
Q  72 cctgcaatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccattttgttcaccatt 171  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||   || |||| ||||||| |||||||||||| |||||||||    
T  17214557 cctgcaatgtctcaggttgtgaagacaaacaaaggaatcctggattttgaatctcttctctgagtaaacttaaatcatccttgccattttcttcaccatt 17214656  T
Q  172 ac 173  Q
    ||    
T  17214657 ac 17214658  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 17214263 - 17214314
Alignment:
Q  20 gattcttgctgactatgatgaggtagaagaccttgttgagaagacaatggtt 71  Q
    |||||||||||| || |||||||||||||| ||||||| |||||||||||||    
T  17214263 gattcttgctgattaagatgaggtagaagatcttgttgggaagacaatggtt 17214314  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 17215191 - 17215236
Alignment:
Q  380 ttcctgtaaaagactaaggattgggaagtggagtagtatttggtaa 425  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||||    
T  17215191 ttcctgtaaaagaccaaggattggggagtggaggagtatttggtaa 17215236  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Complemental strand, 17215308 - 17215270
Alignment:
Q  380 ttcctgtaaaagactaaggattgggaagtggagtagtat 418  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  17215308 ttcctgtaaaagaccaaggattggggagtggagtagtat 17215270  T

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Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 385 - 498
Target Start/End: Original strand, 31243186 - 31243299
Alignment:
Q  385 gtaaaagactaaggattgggaagtggagtagtatttggtaaggaagaaccagcatttgtttcactactagttgactgatccctggcttggctgtcataga 484  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| | |||||||    
T  31243186 gtaaaagaccagggattgggaagtggagtagtatttggtaacgaagaaccagcatttgtttcactaccatttgactgatccctggcttggttttcataga 31243285  T
Q  485 ttcctgcagcgaca 498  Q
    ||||||||||||||    
T  31243286 ttcctgcagcgaca 31243299  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 184 - 346
Target Start/End: Original strand, 31242761 - 31242912
Alignment:
Q  184 ctctgggtgggaaggtataaattcttgtagcgcaggttgatcttgcactaattgggtcgataaattagcatttgacataacataacatgtccacccaaca 283  Q
    ||||||||||||||||||||| ||||||||      ||||||||||||||||||||||||||||||||||||||      |||||||||||||||||| |    
T  31242761 ctctgggtgggaaggtataaactcttgtag------ttgatcttgcactaattgggtcgataaattagcatttg-----ccataacatgtccacccaata 31242849  T
Q  284 ggctatctacaatggaaaaatcaattctttctaagacaataggttcgcgttgtatataatcat 346  Q
    ||||||| ||| ||||||||||||||  ||||||||||| ||||||||| |||| ||||||||    
T  31242850 ggctatcaacattggaaaaatcaattggttctaagacaacaggttcgcgctgtagataatcat 31242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 31242563 - 31242676
Alignment:
Q  72 cctgcaatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccattttgttcaccatt 171  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||   ||||||| |||||||||||  |||||||||||| ||||    
T  31242563 cctgcaatgtctcaggttgtgaatacagagaaaggaaatctggattttgaatctcttctctgagaaaacttaaatcagcctcaccattttgttcagcatt 31242662  T
Q  172 acgaccatcaaact 185  Q
    ||||||| ||||||    
T  31242663 acgaccaccaaact 31242676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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