View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5886-Insertion-6 (Length: 193)
Name: NF5886-Insertion-6
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5886-Insertion-6 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 11294541 - 11294726
Alignment:
| Q |
8 |
aagaacttgatccatttttctcagagtacgtctactaagaatcaacaattttatattttacttgttgtgactataaatataatcaactatttctcatatg |
107 |
Q |
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| T |
11294541 |
aagaacttgatccatttttctcaaagtacgtctactaagaatcaacaattttatattttgcttgttgtgactataaatataatcaactatttctcatatg |
11294640 |
T |
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| Q |
108 |
cattcaatcatatctcgagctatgtatgttttataactctcatgtataattagatttttatacattttggattaggactaatatca |
193 |
Q |
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| T |
11294641 |
cattcaatcatatctcgagctatgtatgttttataactctcatgtataattagatttttatacattttggattaggactaatatca |
11294726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 11300641 - 11300679
Alignment:
| Q |
152 |
tataattagatttttatacattttggattaggactaata |
190 |
Q |
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| T |
11300641 |
tataattagatttttatacattttggattaggactaata |
11300679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 11300419 - 11300468
Alignment:
| Q |
8 |
aagaacttgatccatttttctcagagtacgtctac--taagaatcaacaa |
55 |
Q |
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| T |
11300419 |
aagaatttgatccatttttctcagagtacgtctactataagaatcaacaa |
11300468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 30911657 - 30911704
Alignment:
| Q |
8 |
aagaacttgatccatttttctcagagtacgtctactaagaatcaacaa |
55 |
Q |
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| T |
30911657 |
aagaacttgatccattattctcagagtaagtctactaagaatcaacaa |
30911704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 30911723 - 30911765
Alignment:
| Q |
44 |
aagaatcaacaattttatattttacttgttgtgactataaata |
86 |
Q |
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| T |
30911723 |
aagaatcaacaaatttatattttgcttgttgtggctataaata |
30911765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 30911906 - 30911944
Alignment:
| Q |
152 |
tataattagatttttatacattttggattaggactaata |
190 |
Q |
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||||| || |||||||||||||||||||||||||||||| |
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| T |
30911906 |
tataagtatatttttatacattttggattaggactaata |
30911944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 30905242 - 30905278
Alignment:
| Q |
8 |
aagaacttgatccatttttctcagagtacgtctacta |
44 |
Q |
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| T |
30905242 |
aagaacttgatccatttttctcaaagtaagtctacta |
30905278 |
T |
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