View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5886-Insertion-7 (Length: 140)
Name: NF5886-Insertion-7
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5886-Insertion-7 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 9e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 27305173 - 27305042
Alignment:
| Q |
9 |
aagccattatcatctcctttataatttccgtctttggttattcgtcaagcgcaaggcctgaaagctgctcaattctagtttaccctgcaatgagtaaagg |
108 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
27305173 |
aagccattatcatctcctttattatttccgtctttggttattcgtcaagcgcaaggccagcaagctgctcaattctagtttaccctgcaatgagtaaagg |
27305074 |
T |
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| Q |
109 |
gaaactgacattagttttcattacaaatctat |
140 |
Q |
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| T |
27305073 |
gaaactgacattagttttcattacaaatctat |
27305042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 27302146 - 27302024
Alignment:
| Q |
18 |
tcatctcctttataatttccgtctttggttattcgtcaagcgcaaggcctgaaagctgctcaattctagtttaccctgcaatgagtaaagggaaactgac |
117 |
Q |
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| T |
27302146 |
tcatctcctttattatttccgtctttggttattcgtcaagctcaagacctgcaagctgctcgattctagtttaccctgcaatgagtaaagcgaaattgac |
27302047 |
T |
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| Q |
118 |
attagttttcattacaaatctat |
140 |
Q |
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| T |
27302046 |
attagttttctttacaaatctat |
27302024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 27243663 - 27243593
Alignment:
| Q |
70 |
aagctgctcaattctagtttaccctgcaatgagtaaagggaaactgacattagttttcattacaaatctat |
140 |
Q |
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| T |
27243663 |
aagctgctcagtactaatttaccctgcaattagtaaagtgaaattgatattagttttctttacaaatctat |
27243593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 27282241 - 27282171
Alignment:
| Q |
70 |
aagctgctcaattctagtttaccctgcaatgagtaaagggaaactgacattagttttcattacaaatctat |
140 |
Q |
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| T |
27282241 |
aagctgctcaatactagtttatcctgcaattagtaaagtgaaattgatattagttttctttataaatctat |
27282171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 27158718 - 27158650
Alignment:
| Q |
65 |
cctgaaagctgctcaattctagtttaccctgcaatgagtaaagggaaactgacattagttttcattaca |
133 |
Q |
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| T |
27158718 |
cctgcaagctgctcaatactaatttaccctgcaatgagcaaagtaaatatgacattagttttctttaca |
27158650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 27249607 - 27249553
Alignment:
| Q |
70 |
aagctgctcaattctagtttaccctgcaatgagtaaagggaaactgacattagtt |
124 |
Q |
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| T |
27249607 |
aagctgctcgatactagtttaccctgcaattagtaaagtgaaattgatattagtt |
27249553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 14889404 - 14889475
Alignment:
| Q |
65 |
cctgaaagctgctcaattctagtttaccctgcaatgagtaaagggaaactgacattagttttcattacaaat |
136 |
Q |
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| T |
14889404 |
cctgcaagctgctcagtactagtttaccctgcaattagtaaaatgaaattgatattagttttctttacaaat |
14889475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 14883753 - 14883824
Alignment:
| Q |
65 |
cctgaaagctgctcaattctagtttaccctgcaatgagtaaagggaaactgacattagttttcattacaaat |
136 |
Q |
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| T |
14883753 |
cctgcaagctgctcagtactagtttaccctgcaattagtaaaatgaaattgatattagttttctgtacaaat |
14883824 |
T |
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