View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5886_high_2 (Length: 577)

Name: NF5886_high_2
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5886_high_2
NF5886_high_2
[»] chr4 (10 HSPs)
chr4 (1-561)||(6410027-6410587)
chr4 (73-358)||(38093451-38093734)
chr4 (69-212)||(24957481-24957624)
chr4 (73-342)||(55728934-55729202)
chr4 (1-138)||(23054184-23054319)
chr4 (125-363)||(12485125-12485357)
chr4 (1-138)||(53202302-53202438)
chr4 (3-119)||(47518419-47518535)
chr4 (256-363)||(12469001-12469109)
chr4 (267-363)||(12466358-12466454)
[»] chr8 (3 HSPs)
chr8 (1-363)||(6444071-6444433)
chr8 (1-136)||(10408861-10408995)
chr8 (1-138)||(5994666-5994802)
[»] chr1 (8 HSPs)
chr1 (1-209)||(11407863-11408071)
chr1 (2-117)||(34118009-34118124)
chr1 (75-348)||(32058769-32059028)
chr1 (79-138)||(39708971-39709029)
chr1 (80-138)||(26236624-26236682)
chr1 (80-138)||(34655070-34655127)
chr1 (193-288)||(14350759-14350854)
chr1 (83-138)||(615823-615877)
[»] chr2 (7 HSPs)
chr2 (71-363)||(38530938-38531216)
chr2 (1-138)||(17375313-17375449)
chr2 (1-138)||(17281894-17282030)
chr2 (1-138)||(1551548-1551684)
chr2 (1-138)||(1895446-1895582)
chr2 (80-133)||(3921684-3921736)
chr2 (73-159)||(14950199-14950285)
[»] chr6 (4 HSPs)
chr6 (220-363)||(30845795-30845938)
chr6 (1-138)||(20740614-20740750)
chr6 (1-118)||(21881503-21881620)
chr6 (74-138)||(30845650-30845714)
[»] scaffold0044 (1 HSPs)
scaffold0044 (218-359)||(42459-42600)
[»] chr5 (6 HSPs)
chr5 (1-138)||(7766955-7767091)
chr5 (73-359)||(12156597-12156882)
chr5 (1-138)||(27170039-27170175)
chr5 (1-119)||(18696969-18697087)
chr5 (84-138)||(7271893-7271946)
chr5 (80-138)||(41355496-41355553)
[»] scaffold0157 (1 HSPs)
scaffold0157 (125-363)||(35120-35352)
[»] chr7 (1 HSPs)
chr7 (72-145)||(3302682-3302754)


Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 6410027 - 6410587
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6410027 ccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgaccgatccatcaccacctattttg 6410126  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaaaagacgaaaaatcaggtcatcggagttgaacg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  6410127 cgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaaaagacgaaaaatcaggccatcagagttgaacg 6410226  T
Q  201 gccagagaaacagagctgcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaaccgccgtgcaggaccatcaacatatttgga 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6410227 gccagagaaacagagctgcaacacaattcacgaccccacaagaggtcgaccgctggaaccaccgccaaaaccgccgtgcaggaccatcaacatatttgga 6410326  T
Q  301 ggttggtgatgtggagggcacaagccgctcgtcgcaccaccataaacgacgtctacatcttaaaaggataattttgaaatatacttaaattaaagtgtgc 400  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||    
T  6410327 ggtaggtgatgcggagggcacaagccgctcgtcgcaccaccataaacgacgtctacatcttaagaagataattttaaaatatacttaaattaaagtgtgc 6410426  T
Q  401 gaagacgtgataattctcagtcgaactttgaattactatgactcattttccctaaaaactagagggataacatnnnnnnnnttgaagagtgcgaagacat 500  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||        |||||||||||||||||||    
T  6410427 gaagacgtgataattctcagtcgaactttgaattactataactcattttccctaaaaaccggagggataacataaaaaaaattgaagagtgcgaagacat 6410526  T
Q  501 tgaatataatagtttttattagannnnnnnnnaggggtatagtttttattagatgttagtg 561  Q
    |||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  6410527 tgaatataatagtttttattagattattttttaggggtatagtttttattagatgttagtg 6410587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 73 - 358
Target Start/End: Original strand, 38093451 - 38093734
Alignment:
Q  73 cgtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaaaa-g 171  Q
    |||||||||||||||||  || |  ||||||||||||| ||||| |||||||| |||||| |||||  | ||||  ||||| |||||||  | ||||| |    
T  38093451 cgtgaccgatccatcactgcccacgttgcgagcaaacaaaacctacatccaccgccaagaaagaaaacggatctgatatcaaccaccacataccaaaaag 38093550  T
Q  172 acgaaaaatcaggtcatcggagttgaacggccagagaaacagagctgcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaac 271  Q
    || || |  || |||||||| ||||||||||| ||||| |||| || ||||||| |||||||| || |||||||||||| |||| |||||||||||||||    
T  38093551 acaaaca--caagtcatcggtgttgaacggccggagaaccaga-ctccaacacatttcacgactccacaagaggtcgactgccgaaaccaccgccaaaac 38093647  T
Q  272 cgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggcacaagccgctcgtcgcaccaccataaacgacgtctacat 358  Q
    | | || || |||||||  || || ||||||| |||| ||  ||||||  ||||||||||||||||||||||||||| | |||||||    
T  38093648 cactgtacaagaccatcggcagatctggaggtaggtggtgcagagggcttaagccgctcgtcgcaccaccataaacggcttctacat 38093734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 24957624 - 24957481
Alignment:
Q  69 ccttcgtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaa 168  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||| |||||   |||||  ||||| |||| || | ||||    
T  24957624 ccttcgtgaccgatacatcaccacctatgttgcgagcaaacataacctccacccacctccaagaaagaaaacaaatctgatatcaaccacgacaccacaa 24957525  T
Q  169 aagacgaaaaatcaggtcatcggagttgaacggccagagaaaca 212  Q
    |||| ||||  ||||| |||| ||||||||||||||||||||||    
T  24957524 aagatgaaacctcaggccatcagagttgaacggccagagaaaca 24957481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 73 - 342
Target Start/End: Original strand, 55728934 - 55729202
Alignment:
Q  73 cgtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaac-aaaag 171  Q
    ||||||||||| |||||||||||  ||||||||||||| ||||| ||||||||  ||||| |||||  | ||||  ||||| ||| | |  | | |||||    
T  55728934 cgtgaccgatctatcaccacctacgttgcgagcaaacaaaacctacatccaccgtcaagaaagaaagcggatctaatatcaaccatcgcataccgaaaag 55729033  T
Q  172 acgaaaaatcaggtcatcggagttgaacggccagagaaacagagctgcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaac 271  Q
    ||  ||| ||| | |||||| |||||||   |||||||| ||||| |||||||| |||||||| || |||||| ||||||   ||||||||||||||||     
T  55729034 ac--aaactcaagccatcggtgttgaactatcagagaaatagagccgcaacacatttcacgactccacaagagatcgacctttggaaccaccgccaaaat 55729131  T
Q  272 cgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggcacaagccgctcgtcgcaccacca 342  Q
    | |||| || |||||||  ||||| ||||||| |||| || |||||||  |||||||||||||||||||||    
T  55729132 caccgtacaagaccatcggcatatctggaggtaggtggtgcggagggcttaagccgctcgtcgcaccacca 55729202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 23054319 - 23054184
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| ||| |||||||||| || ||||||| ||||  | || ||||| | | |  || ||||||| ||||||||||||||||| |||    
T  23054319 ccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatatgatccagcaca-ccatcgtgactgatccatcaccacctatgttg 23054221  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  23054220 cgagcaaacataacctcca-ccacaaccaagagagaaa 23054184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 125 - 363
Target Start/End: Complemental strand, 12485357 - 12485125
Alignment:
Q  125 caccaagagagaaattgaatcttgtatcagccaccacgcaacaaaa-gacgaaaaatcaggtcatcggagttgaacggccagagaaacagagctgcaaca 223  Q
    ||||||||||||||   |||||  ||||| |  ||||||||||||| ||| |||| ||||| |||  | |||||| ||| ||||||||| ||| ||||||    
T  12485357 caccaagagagaaaacaaatctcatatcaacttccacgcaacaaaaagacaaaaactcaggccattagtgttgaaaggctagagaaacaaagccgcaaca 12485258  T
Q  224 caattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaa-ccgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggcaca 322  Q
    ||  | |||||||| | |||||||||        ||||||||||||| |||   |||||||||||| ||| || ||||||| |||| ||  |||||| ||    
T  12485257 catattacgaccccactagaggtcga--------accaccgccaaaaaccgtgttgcaggaccatcgacaaatatggaggtaggtggtgcagagggctca 12485166  T
Q  323 agccgctcgtcgcaccaccataaacgacgtctacatcttaa 363  Q
    ||| ||||||||||||||||||||||||||| | |||||||    
T  12485165 agctgctcgtcgcaccaccataaacgacgtccaaatcttaa 12485125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 53202302 - 53202438
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    |||| |||||| ||||| |||||||||||||  || ||||||| |||   | || ||||  ||| || || ||||||||||||  ||||||||||| |||    
T  53202302 ccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatatgattcatcaccaccatcgtgaccgatctgtcaccacctatgttg 53202401  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  53202402 cgagcaaacataacctcca-ccacaaccaagagagaaa 53202438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 47518535 - 47518419
Alignment:
Q  3 aacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttgcg 102  Q
    ||||||||| ||||| |||||||||||||  || ||||||| ||||  | || ||||  ||| || || | ||||| ||||||||||||||||| |||||    
T  47518535 aacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgattcatcaccaccattgtgactgatccatcaccacctatgttgcg 47518436  T
Q  103 agcaaacataacctcca 119  Q
    |||||||||||||||||    
T  47518435 agcaaacataacctcca 47518419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 12469109 - 12469001
Alignment:
Q  256 gaaccaccgcca-aaaccgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggcacaagccgctcgtcgcaccaccataaacgacgtct 354  Q
    |||||||||| | ||||||||||||||||| |||  || || ||||||| |||| ||  |||||| ||||  |||| ||||||||||||||||||||| |    
T  12469109 gaaccaccgcaacaaaccgccgtgcaggactatcgtcaaatatggaggtaggtggtgcagagggctcaagatgctcatcgcaccaccataaacgacgttt 12469010  T
Q  355 acatcttaa 363  Q
    |||||||||    
T  12469009 acatcttaa 12469001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 12466454 - 12466358
Alignment:
Q  267 aaaaccgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggcacaagccgctcgtcgcaccaccataaacgacgtctacatcttaa 363  Q
    |||||||||||| ||||| ||   || || ||||||| |||| ||  |||||| ||||  |||| || |||||||||||||||||||||||||||||    
T  12466454 aaaaccgccgtgtaggactattgtcaaatatggaggtaggtggtgcagagggctcaagatgctcatcacaccaccataaacgacgtctacatcttaa 12466358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 6444071 - 6444433
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||| | ||||||| |||||||||||| || ||||| | |||||||||||||||| ||| || |||| |||||| |||||| ||||||||  |||    
T  6444071 ccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatctgatccatcaccacctttgtgaccaatccataaccacctaagttg 6444170  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaaaagacgaaaaatcaggtcatcggagttgaacg 200  Q
    |||||||||||||||||||||||| ||||||||||||||  ||| |  ||||| ||||  | |||||||||| ||||| ||| | ||||  ||||||||     
T  6444171 cgagcaaacataacctccatccacaaccaagagagaaatcaaatatcatatcaaccactgcacaacaaaagaagaaaactcaagccatcatagttgaaca 6444270  T
Q  201 gccagagaaacagagctgcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaaccgccgtgcaggaccatcaacatatttgga 300  Q
     |||||||||||||| || |  ||||||||||||||| |||||||| ||||| ||||||||| |||||||| | |||||||||||||| ||| || ||||    
T  6444271 accagagaaacagagttgtattacaattcacgaccccacaagaggttgaccgtcggaaccactgccaaaactgtcgtgcaggaccatccacagatctgga 6444370  T
Q  301 ggttggtgatgtggagggcacaagccgctcgtcgcaccaccataaacgacgtctacatcttaa 363  Q
    ||| | ||||| ||||| ||||||||||||||| |||||||||||||||| |||| |||||||    
T  6444371 ggtagctgatgcggaggacacaagccgctcgtcacaccaccataaacgacatctagatcttaa 6444433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 10408861 - 10408995
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| |||||||||||||||||||| | |||||||| ||||  | || ||||| ||| || || ||||||||| ||||||||||||||| |||    
T  10408861 ccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctagatatgatccatcaccaccatcgtgaccgttccatcaccacctatgttg 10408960  T
Q  101 cgagcaaacataacctccatccaccaccaagagaga 136  Q
    ||||||||||||||||||| |||| |||||||||||    
T  10408961 cgagcaaacataacctcca-ccacaaccaagagaga 10408995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 5994666 - 5994802
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| |||| ||||||||| || ||||||| |||| || || ||||| ||| || || || ||| |||||||| | ||| ||| |||    
T  5994666 ccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatatgatccatcaccaccatcatgatcgatccattagcac-tatgttg 5994764  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  5994765 cgagcaaacataacatccatccacaaccaagagagaaa 5994802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 11408071 - 11407863
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||||  |||||||||||| | ||||||||  ||| ||||||||||| ||| || |||||||| ||||||||||||||| ||| |||    
T  11408071 ccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggccgatccatcaccacttatgttg 11407972  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaaaagacgaaaaatcaggtcatcggagttgaacg 200  Q
    ||||||||||||||||||| ||||||||||||||||||   ||| |  ||||| | || || |||||||||| ||||  ||| | |||||||||||||||    
T  11407971 cgagcaaacataacctccacccaccaccaagagagaaaacaaatatgatatcaactacgacacaacaaaagatgaaacctcaagccatcggagttgaacg 11407872  T
Q  201 gccagagaa 209  Q
    |||| ||||    
T  11407871 gccatagaa 11407863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 34118009 - 34118124
Alignment:
Q  2 caacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttgc 101  Q
    |||||||||| ||||| ||  |||||||||| || ||||||| ||||  | || ||||| ||| || || ||||||||||||||||||||||||| ||||    
T  34118009 caacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctatgttgc 34118108  T
Q  102 gagcaaacataacctc 117  Q
    ||||||||||||||||    
T  34118109 gagcaaacataacctc 34118124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 348
Target Start/End: Original strand, 32058769 - 32059028
Alignment:
Q  75 tgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaaaagacg 174  Q
    ||||||| | |||||||||||  ||||||||||||| ||||| || |||||  |||||||||||  | |||| |||||| |||||||  | ||||||||     
T  32058769 tgaccgacctatcaccacctacgttgcgagcaaacagaaccttcacccaccgtcaagagagaaaacggatctggtatcaaccaccacataccaaaagac- 32058867  T
Q  175 aaaaatcaggtcatcggagttgaacggccagagaaacagagctgcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaaccgc 274  Q
     ||| ||| |  ||| | |||||||||||||||||||||||| | |||||||||||| || || | |||||||            ||||| |||||  ||    
T  32058868 -aaactcaagcaatcagtgttgaacggccagagaaacagagccgtaacacaattcacaactccaccagaggtc------------caccgtcaaaattgc 32058954  T
Q  275 cgtgcaggaccatcaacatatttggaggttggtgatgtggagggcacaagccgctcgtcgcaccaccataaacg 348  Q
     ||  ||||||||| ||| || ||||||| |||| || ||||||| ||||||||| ||||||||||||||||||    
T  32058955 agtttaggaccatcgacagatctggaggtaggtggtgcggagggctcaagccgctggtcgcaccaccataaacg 32059028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 39709029 - 39708971
Alignment:
Q  79 cgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  39709029 cgatccatcaccacctatattgcgagcaaacataacctcca-ccacaaccaagagagaaa 39708971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 26236682 - 26236624
Alignment:
Q  80 gatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    |||||||||||| |||| || |||| ||||||||||||||||||||||| |||||||||    
T  26236682 gatccatcaccatctatgtttcgagtaaacataacctccatccaccaccgagagagaaa 26236624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 34655070 - 34655127
Alignment:
Q  80 gatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||    
T  34655070 gatccatcaccacctatgttgcgagcaaacataacctcca-ccacaaccaaaagagaaa 34655127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 14350854 - 14350759
Alignment:
Q  193 gttgaacggccagagaaacagagctgcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaaccgccgtgcaggaccatc 288  Q
    |||||||||||||||||||||||  |  | ||| |||||||| || |||||| ||||  | |||||| |||||||||||| |||| ||||||||||    
T  14350854 gttgaacggccagagaaacagagtcgtgatacatttcacgactccacaagagatcgatagtcggaacaaccgccaaaaccaccgtacaggaccatc 14350759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 615823 - 615877
Alignment:
Q  83 ccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    |||||||||||||| |||||| ||||||||| ||||| |||| |||||||||||||    
T  615823 ccatcaccacctatgttgcgatcaaacataatctcca-ccacaaccaagagagaaa 615877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 71 - 363
Target Start/End: Complemental strand, 38531216 - 38530938
Alignment:
Q  71 ttcgtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaaaa 170  Q
    ||||| |||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||| |||||    |||| |||||| |||||||  | |||||    
T  38531216 ttcgtaaccgatccatcaccacatatgttgcgaacaaacaaaacctccatccaccaccaagaaagaaaacagatctggtatcaaccaccacataccaaaa 38531117  T
Q  171 -gacgaaaaatcaggtcatcggagttgaacggccagagaaacagagctgcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaa 269  Q
     |||  ||| ||| | |||||| |||||||| | ||||||||| | |||||||| | |||||||| || ||||||||||||||||            |||    
T  38531116 agac--aaactcaagccatcggtgttgaacgac-agagaaacaaaactgcaacatatttcacgactccacaagaggtcgaccgcc------------aaa 38531032  T
Q  270 accgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggcacaagccgctcgtcgcaccaccataaacgacgtctacatcttaa 363  Q
      |  ||| |||||||||| |||||| |||| || |||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  38531031 ttcatcgtacaggaccatcgacatatctggaagtaggtggtgcggagggctcaagccgctcgtcgcaccaccataaacgacctctacatcttaa 38530938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17375313 - 17375449
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| |||||||||||||||||||| || ||||||| ||||  | || ||||| ||| || || |||||| |||||||||||||||||| |||    
T  17375313 ccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgatcgatccatcaccacctatgttg 17375412  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
     |||||||||||||||||| |||| ||||| |||||||    
T  17375413 tgagcaaacataacctcca-ccacaaccaatagagaaa 17375449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 17282030 - 17281894
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| |||||||||||||  || |||||||  |||  | || ||||| ||| || || | ||||| ||||||||||||||||| |||    
T  17282030 ccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagatatgatccatcaccaccattgtgactgatccatcaccacctatgttg 17281931  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  17281930 cgagcaaacataacctcca-ccactaccaagagagaaa 17281894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 1551684 - 1551548
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| ||||||||| |||  || ||||||| ||||  |||  ||||| ||| || || ||||||| ||||||||||||||||| |||    
T  1551684 ccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacatgatccatcaccaccatcgtgactgatccatcaccacctatgttg 1551585  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    |||||||||||||| |||| |||| ||||| |||||||    
T  1551584 cgagcaaacataacatcca-ccacaaccaatagagaaa 1551548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 1895446 - 1895582
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| |||||||||||||  || ||||||| ||||  | || |||   ||| || || || ||||||||| |||||||||||| |||    
T  1895446 ccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgactcatcaccaccatcatgaccgatcaatcaccacctatgttg 1895545  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    |||||| |||||||||||| |||| |||||||||||||    
T  1895546 cgagcagacataacctcca-ccacaaccaagagagaaa 1895582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 3921684 - 3921736
Alignment:
Q  80 gatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagag 133  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||| ||||||||    
T  3921684 gatccatcaccacctatgttgcgagcaaacataacatcca-ccacaaccaagag 3921736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 14950285 - 14950199
Alignment:
Q  73 cgtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccacc 159  Q
    |||||||||||||||||||||||  | || |||||||| ||||| ||||||||  ||||| |||||  | |||| |||||| |||||    
T  14950285 cgtgaccgatccatcaccacctacgtcgcaagcaaacaaaacctacatccaccgtcaagaaagaaaacggatctggtatcaaccacc 14950199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 220 - 363
Target Start/End: Original strand, 30845795 - 30845938
Alignment:
Q  220 aacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaaccgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggc 319  Q
    ||||||||||||||| || |||||||||||| | |||||||||| |||||||||  || ||||||||||  || || ||||||| |||| || ||||||     
T  30845795 aacacaattcacgactccacaagaggtcgactgtcggaaccaccaccaaaaccgttgtacaggaccatcggcaaatctggaggtaggtggtgcggagggt 30845894  T
Q  320 acaagccgctcgtcgcaccaccataaacgacgtctacatcttaa 363  Q
     |||||||||||||||||||||||||||| | ||||||||||||    
T  30845895 tcaagccgctcgtcgcaccaccataaacggcctctacatcttaa 30845938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 20740614 - 20740750
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| |||||||||||||  || ||||||  ||||  | || ||||| ||| || || |||||||| |||||||||||||||| |||    
T  20740614 ccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatatgatccatcaccaccatcgtgaccaatccatcaccacctatgttg 20740713  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    |||||||||||||| |||| |||| |||||||||||||    
T  20740714 cgagcaaacataacatcca-ccacaaccaagagagaaa 20740750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 21881503 - 21881620
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    |||||| |||| |||||||||||||||||||  || ||||||| ||||  | || ||||| ||| || || ||||||||||||||||||||||| | |||    
T  21881503 ccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatccatcaccacctttgttg 21881602  T
Q  101 cgagcaaacataacctcc 118  Q
    ||||||||||||||||||    
T  21881603 cgagcaaacataacctcc 21881620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 30845650 - 30845714
Alignment:
Q  74 gtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    ||||||||||||||  ||||||| ||||||| ||||| ||||| |||||||| ||||||||||||    
T  30845650 gtgaccgatccatctgcacctatgttgcgagaaaacaaaaccttcatccaccgccaagagagaaa 30845714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 218 - 359
Target Start/End: Complemental strand, 42600 - 42459
Alignment:
Q  218 gcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaaccgccgtgcaggaccatcaacatatttggaggttggtgatgtggagg 317  Q
    |||||||| |||||||| || ||||||||||||  ||| |||||||||||||||| | || || |||||||  || || ||||||| |||| || |||||    
T  42600 gcaacacatttcacgactccacaagaggtcgacttccgaaaccaccgccaaaaccactgtacaagaccatcggcagatctggaggtaggtggtgcggagg 42501  T
Q  318 gcacaagccgctcgtcgcaccaccataaacgacgtctacatc 359  Q
    ||  |||||||||||||||||||||||||| || ||||||||    
T  42500 gcttaagccgctcgtcgcaccaccataaacaacctctacatc 42459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 7767091 - 7766955
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| |||||||||||||| |  ||||||| ||||  | || ||||| ||| || || | ||| |||||| |||||||||||| |||    
T  7767091 ccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatatgatccatcaccaccattgtggccgatcaatcaccacctatgttg 7766992  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  7766991 cgagcaaacataacctccat-cacaaccaagagagaaa 7766955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 73 - 359
Target Start/End: Original strand, 12156597 - 12156882
Alignment:
Q  73 cgtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatcttgtatcagccaccacgcaacaaaa-g 171  Q
    |||||| ||||||||||||||||  |||| |||||||| ||||| ||||||||  ||||| |||||    ||||  ||||| ||||| |  | ||||| |    
T  12156597 cgtgactgatccatcaccacctacattgcaagcaaacaaaacctacatccaccgtcaagaaagaaaacagatctgatatcaaccaccgcataccaaaaag 12156696  T
Q  172 acgaaaaatcaggtcatcggagttgaacggccagagaaacagagctgcaacacaattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaac 271  Q
    ||  ||| ||| | |||||| |||||||||||||||||||||||  || | ||| |||||||| || |||||| ||||  | ||||||||||||||||||    
T  12156697 ac--aaactcaagccatcggtgttgaacggccagagaaacagagtcgcgatacatttcacgactccacaagagatcgatagtcggaaccaccgccaaaac 12156794  T
Q  272 cgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggcacaagccgctcgtcgcaccaccataaacgacgtctacatc 359  Q
    | ||||  || ||||||  |  || ||||||| |||| || ||| |||  |||||||||||||||||||||  |||| | ||||||||    
T  12156795 caccgtatagaaccatcggcggatctggaggtaggtggtgcggaaggcttaagccgctcgtcgcaccaccaataacggcctctacatc 12156882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 27170175 - 27170039
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| |||||||||||||| || || ||||  ||  || || ||||| ||  || || ||||||||||||||||||||| ||  |||    
T  27170175 ccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatatgatccattaccaccatcgtgaccgatccatcaccacttacgttg 27170076  T
Q  101 cgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  27170075 cgagcaaacataacctcca-ccacaaccaagagagaaa 27170039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 18696969 - 18697087
Alignment:
Q  1 ccaacacaacccaagattcatcgaaaccataatagatcataagagaactcatatctgatcgatcgccgccttcgtgaccgatccatcaccacctattttg 100  Q
    ||||||||||| ||||| || |||| |||||| || ||||||| ||||  | || ||||| ||| || || ||||||| ||||||||||||||||| |||    
T  18696969 ccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgactgatccatcaccacctatgttg 18697068  T
Q  101 cgagcaaacataacctcca 119  Q
    || ||||||||||||||||    
T  18697069 cgggcaaacataacctcca 18697087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 7271893 - 7271946
Alignment:
Q  84 catcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    ||||||||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  7271893 catcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagagaaa 7271946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 41355553 - 41355496
Alignment:
Q  80 gatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaa 138  Q
    ||||||||||| ||||| ||||||||||| |||||||||| |||| |||||||||||||    
T  41355553 gatccatcaccgcctatgttgcgagcaaatataacctcca-ccacaaccaagagagaaa 41355496  T

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Target: scaffold0157 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 125 - 363
Target Start/End: Original strand, 35120 - 35352
Alignment:
Q  125 caccaagagagaaattgaatcttgtatcagccaccacgcaacaaaa-gacgaaaaatcaggtcatcggagttgaacggccagagaaacagagctgcaaca 223  Q
    ||||||||||||||   |||||  ||||| |  ||||||||||||| ||| |||| ||||| |||  | |||||| ||| ||||||||| ||| ||||||    
T  35120 caccaagagagaaaacaaatctcatatcaacttccacgcaacaaaaagacaaaaactcaggccattagtgttgaaaggctagagaaacaaagccgcaaca 35219  T
Q  224 caattcacgaccccgcaagaggtcgaccgccggaaccaccgccaaaa-ccgccgtgcaggaccatcaacatatttggaggttggtgatgtggagggcaca 322  Q
    ||  | |||||||| | |||||||||        ||||||||||||| |||   |||||||||||| ||| || ||||||| |||| ||  |||||| ||    
T  35220 catattacgaccccactagaggtcga--------accaccgccaaaaaccgtgttgcaggaccatcgacaaatatggaggtaggtggtgcagagggctca 35311  T
Q  323 agccgctcgtcgcaccaccataaacgacgtctacatcttaa 363  Q
    ||| ||||||||||||||||||||||||||| | |||||||    
T  35312 agctgctcgtcgcaccaccataaacgacgtccaaatcttaa 35352  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 3302682 - 3302754
Alignment:
Q  72 tcgtgaccgatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatc 145  Q
    |||||| ||||| |||||||||||| |||||||||||||||||||||| |||| |||||||||| || ||||||    
T  3302682 tcgtgatcgatctatcaccacctatgttgcgagcaaacataacctcca-ccacaaccaagagaggaaatgaatc 3302754  T

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