View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5886_high_3 (Length: 552)

Name: NF5886_high_3
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5886_high_3
NF5886_high_3
[»] chr7 (5 HSPs)
chr7 (48-121)||(3801796-3801869)
chr7 (279-530)||(3787446-3787687)
chr7 (48-140)||(3787720-3787812)
chr7 (146-219)||(3786181-3786254)
chr7 (147-207)||(38754317-38754377)
[»] chr1 (2 HSPs)
chr1 (145-222)||(19933545-19933623)
chr1 (146-186)||(46584355-46584395)
[»] chr8 (1 HSPs)
chr8 (146-218)||(35437804-35437878)
[»] chr3 (3 HSPs)
chr3 (145-211)||(35362756-35362822)
chr3 (159-219)||(39990048-39990108)
chr3 (147-222)||(10274378-10274455)
[»] chr4 (1 HSPs)
chr4 (255-309)||(36917055-36917109)
[»] chr2 (2 HSPs)
chr2 (147-208)||(32514388-32514449)
chr2 (147-219)||(37101344-37101417)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 3801796 - 3801869
Alignment:
Q  48 taacccatcaaaactatcggtgtctagagctatatcctaattcatggaaaaacaaactctaacttatcccaaaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3801796 taacccatcaaaactatcggtgtctagagctatatcctaattcatggaaaaacaaactctaacttatcccaaaa 3801869  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 279 - 530
Target Start/End: Complemental strand, 3787687 - 3787446
Alignment:
Q  279 aaatacctatgtttttaagtcaatatttcacctcaattcttcctatttacttcaaaacaacagtgatacaaatttatccgccaaccactttactgctctc 378  Q
    |||||||  ||||||||||||| |||||||||||||||||||| ||| ||||||||||||   || ||  |||||||||          ||| || ||||    
T  3787687 aaatacccttgtttttaagtcagtatttcacctcaattcttcccattgacttcaaaacaatgatggtattaatttatcc----------ttaatgatctc 3787598  T
Q  379 accaatgctatcgagtatttttaagattgcctatggaataatgataaatattattatcagtgtctcttttggatgatgttgagtattcttagcaccactt 478  Q
    |||||||||  |||||| |||||  |  |||| | |||||||||||||||||||||  ||||||||| | ||||||||||||||| |||||  ||||| |    
T  3787597 accaatgcttccgagtacttttagcaccgcctctagaataatgataaatattattactagtgtctctctaggatgatgttgagtaatcttaaaaccacct 3787498  T
Q  479 ctctgaaatgaggttcaatattcttatcatcgactctccaggttgaggttga 530  Q
    |||| ||||||| || | ||||| |||||||| ||||  ||||||| |||||    
T  3787497 ctctaaaatgagattgagtattcgtatcatcgcctctttaggttgatgttga 3787446  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 3787812 - 3787720
Alignment:
Q  48 taacccatcaaaactatcggtgtctagagctatatcctaattcatggaaaaacaaactctaacttatcccaaaaagctcagcgagcatagatt 140  Q
    |||||||  ||||||||||| | |||||||  ||||| ||||||||||||||||||||  ||||||||||||||||| || ||||||||||||    
T  3787812 taacccacgaaaactatcggagcctagagcagtatcccaattcatggaaaaacaaacttgaacttatcccaaaaagcacaacgagcatagatt 3787720  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 3786254 - 3786181
Alignment:
Q  146 ttgttgtgaattcgaacccttgtgtaaaatcaacaagacaatatgtgaaacaaataacaatggcaaccaacaac 219  Q
    ||||| |||||| |||||||| || |||||||||||||||||| ||| |||||||||||||| ||| |||||||    
T  3786254 ttgttatgaatttgaacccttatgcaaaatcaacaagacaatacgtggaacaaataacaatgacaaacaacaac 3786181  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 38754377 - 38754317
Alignment:
Q  147 tgttgtgaattcgaacccttgtgtaaaatcaacaagacaatatgtgaaacaaataacaatg 207  Q
    |||||| |||||||| ||||||| |||  |||||||||||||||||||  |||||||||||    
T  38754377 tgttgttaattcgaatccttgtgcaaacccaacaagacaatatgtgaagtaaataacaatg 38754317  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 19933623 - 19933545
Alignment:
Q  145 attgttgtgaattcgaacccttgtgtaaaatcaa-caagacaatatgtgaaacaaataacaatggcaaccaacaaccaa 222  Q
    |||| ||||||||||||||||| || |||| ||| |||||| ||||||| | |||||||||||||||||||||||||||    
T  19933623 attgctgtgaattcgaacccttttgcaaaaacaaacaagacgatatgtggagcaaataacaatggcaaccaacaaccaa 19933545  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 46584355 - 46584395
Alignment:
Q  146 ttgttgtgaattcgaacccttgtgtaaaatcaacaagacaa 186  Q
    ||||||||||||| |||||||||| |||| |||||||||||    
T  46584355 ttgttgtgaattcaaacccttgtgcaaaaccaacaagacaa 46584395  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 35437878 - 35437804
Alignment:
Q  146 ttgttgtgaattcgaacccttgtgtaaaatcaacaagacaata--tgtgaaacaaataacaatggcaaccaacaa 218  Q
    ||||||||||||||||||||| |  ||||||||||||||||||  | || |||||||||||||| ||||||||||    
T  35437878 ttgttgtgaattcgaacccttatacaaaatcaacaagacaatatttttggaacaaataacaatgacaaccaacaa 35437804  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 35362756 - 35362822
Alignment:
Q  145 attgttgtgaattcgaacccttgtgtaaaatcaacaagacaatatgtgaaacaaataacaatggcaa 211  Q
    |||||||||||||||  | |||||  |||||||||||||| | ||||||||||||||||||||||||    
T  35362756 attgttgtgaattcggtcacttgttcaaaatcaacaagaccacatgtgaaacaaataacaatggcaa 35362822  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 39990108 - 39990048
Alignment:
Q  159 gaacccttgtgtaaaatcaacaagacaatatgtgaaacaaataacaatggcaaccaacaac 219  Q
    |||| ||||||| ||| ||||||||||||||||||| |||||||||||| ||| |||||||    
T  39990108 gaacacttgtgttaaaccaacaagacaatatgtgaagcaaataacaatgacaatcaacaac 39990048  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 10274378 - 10274455
Alignment:
Q  147 tgttgtgaattcgaacccttgtgt-aaaatcaacaagacaata--tgtgaaacaaataacaatggcaaccaacaaccaa 222  Q
    |||||||||||| ||||||| ||| |||| |||||||| || |  |||||| |||||||||||||||||||||||||||    
T  10274378 tgttgtgaattcaaaccctt-tgtcaaaaccaacaagataaaaaatgtgaagcaaataacaatggcaaccaacaaccaa 10274455  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 36917109 - 36917055
Alignment:
Q  255 tatagacaatttataaatagattaaaatacctatgtttttaagtcaatatttcac 309  Q
    |||||| |||||||||||||| |||| || | ||||||||||||||| |||||||    
T  36917109 tatagaaaatttataaatagactaaactatccatgtttttaagtcaacatttcac 36917055  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 32514388 - 32514449
Alignment:
Q  147 tgttgtgaattcgaacccttgtgtaaaatcaacaagacaatatgtgaaacaaataacaatgg 208  Q
    |||||||||||  |||||||||| ||||  |||||||||||||| | | |||||||||||||    
T  32514388 tgttgtgaatttaaacccttgtgcaaaactaacaagacaatatgcgtagcaaataacaatgg 32514449  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 37101417 - 37101344
Alignment:
Q  147 tgttgtgaattcgaacccttgtgtaaaatcaacaagacaatatgt-gaaacaaataacaatggcaaccaacaac 219  Q
    ||||||||||| ||||||||||| ||||  ||||||| ||||||| || | |||||||||||| || |||||||    
T  37101417 tgttgtgaatttgaacccttgtgcaaaacaaacaagataatatgtagagaaaaataacaatggaaaacaacaac 37101344  T

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