View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5886_low_11 (Length: 342)

Name: NF5886_low_11
Description: NF5886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5886_low_11
NF5886_low_11
[»] chr7 (4 HSPs)
chr7 (239-335)||(38259748-38259844)
chr7 (136-233)||(38259385-38259482)
chr7 (1-86)||(38259207-38259291)
chr7 (21-53)||(38259270-38259302)
[»] chr3 (1 HSPs)
chr3 (1-46)||(49780622-49780667)
[»] chr6 (1 HSPs)
chr6 (1-40)||(14094576-14094615)
[»] chr5 (1 HSPs)
chr5 (1-40)||(25560906-25560945)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 38259748 - 38259844
Alignment:
Q  239 ttcctccttcccgtgggtagccaataaagaatgatgtacacattcctattcacttcgagcatctatttgattctttaatctatcacgttctctgctc 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38259748 ttcctccttcccgtgggtagccaataaagaatgatgtacacattcctattcacttcgagcatctatttgattctttaatctatcacgttctctgctc 38259844  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 38259385 - 38259482
Alignment:
Q  136 cgtacaacattttcacacttttcattacaaaatttctatattgatttcaacaagattaaatatttttctattataagatgccaagtagcaaattagta 233  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38259385 cgtacaactttttcacacttttcattacaaaatttttatattgatttcaacaagattaaatatttttctattataagatgccaagtagcaaattagta 38259482  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38259207 - 38259291
Alignment:
Q  1 aaaaattatcaattaaataattattcaaataacacaactcaattatcttttttattgcaaatggttattcaaataacacagctcaa 86  Q
    |||| |||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  38259207 aaaagttatcaattaaattgttattcaaataacacaactcaattatattttttattgc-aatggttattcaaataacacaactcaa 38259291  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 38259270 - 38259302
Alignment:
Q  21 ttattcaaataacacaactcaattatctttttt 53  Q
    |||||||||||||||||||||||||| ||||||    
T  38259270 ttattcaaataacacaactcaattatttttttt 38259302  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49780667 - 49780622
Alignment:
Q  1 aaaaattatcaattaaataattattcaaataacacaactcaattat 46  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||    
T  49780667 aaaaattatcacttaaatagttattcaaataacacaactccattat 49780622  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14094615 - 14094576
Alignment:
Q  1 aaaaattatcaattaaataattattcaaataacacaactc 40  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  14094615 aaaaattatcaatcaaataattcttcaaataacacaactc 14094576  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25560945 - 25560906
Alignment:
Q  1 aaaaattatcaattaaataattattcaaataacacaactc 40  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  25560945 aaaaattatcaattaaatagttattcaaataatacaactc 25560906  T

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